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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGGTGCTCGGGACTTGTCGTTTGATTCTTATGGTTATGCTGTTGTTTTCCTGTCCAACATCACTACGGCAATATACCTTGCAACCATAGCCCGTATAGgtagaatttccatttttattttattttttaaaaaacttccaatgacatctcagtagcttgatttctttcttagatgctgatattttcttttctcag

Basic information

species Vitis vinifera
transcript Vv04s0008g05570.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G32030.1 (Glycine max), 5'ss of exon 5
GCGGGTGCTCGGGACTTGTCGTTTGATTCTTATGGTTATGCTGTTGTTTTCCTGTCCAACATCACTACGGCAATATACCTTGCAACCATAGCCCGTATAGgtagaatttccat--ttttattttattttttaaa---aaacttccaa------tgacatctcagta-gcttgatttctttcttagatgctgatattttcttttctcag
|| || || ||||| || || |||||| ||||||| ||||||||||||||| |||| |||||| | || |||||||| ||||||||||||||||| || ||| | ||| | ||  ||||| | | |    ||||   ||| ||   |      |  | ||  ||   || |  ||||||  ||| ||| |    | |  |||| ||||
GCTGGAGCACGGGATTTATCTTTTGATGCTTATGGCTATGCTGTTGTTTTCATGTCGAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTGgttgtattcctatacttttactctctcacataaagtgaaattttataccttcttttcttccaagcctgcatattttcttatttatatggtatcgtgtctttttatcag

upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G14360.1 (Glycine max), 5'ss of exon 5
GCGGGTGCTCGGGACTTGTCGTTTGATTCTTATGGTTATGCTGTTGTTTTCCTGTCCAACATCACTACGGCAATATACCTTGCAACCATAGCCCGTATAGgtagaatttccat--ttttattttattttttaaa---aaacttccaa---tgacatctcagtagcttg--atttctttcttagatgctgatattttcttttctcag
|| || || ||||| || || ||||||  |||||| ||||||||||||||| |||| |||||| | || |||||||| ||||||||||||||||| || ||| | ||| | ||  || || | | |    ||||   ||| ||   |   |    |||    ||| ||   ||||||  ||  ||| |   || |  |||| ||||
GCTGGAGCACGGGATTTATCTTTTGATGGTTATGGCTATGCTGTTGTTTTCATGTCAAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTGgttgtattcctatacttctagtctctcacataaagtgaaattttataccttattttcttcccagcctgcattttcttatttgtatggtatcatgtctttttatcag

upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G07120.1 (Glycine max), 5'ss of exon 3
GCGGGTGCTCGGGACTTGTCGTTTGATTCTTATGGTTATGCTGTTGTTTTCCTGTCCAACATCACTACGGCAATATACCTTGCAACCATAGCCCGTATAGgtagaatttccatttttattttattttttaaa----aaacttccaatgacatctcagt----agcttgatttctttcttagatgctgatattttcttttctcag
||||| || ||||| || || |||||| |  |||| |||||  ||||||||||||| |||||||| || || ||||| |||||||||||||||||| | ||| | ||| |  || |   ||        | |    ||| |    |     | ||  |    || |   |||||| ||||  ||    ||| | ||||| ||||
GCGGGAGCACGGGATTTATCCTTTGATGCCCATGGCTATGCCATTGTTTTCCTGTCAAACATCACCACAGCTATATATCTTGCAACCATAGCCCGTGTTGgtcgtattcctgttctctcttatccacacacagtggaaattctataccttttttccttgtagagttcagtttcttacttatttggcattatgt-cttttttcag

upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G07030.1 (Glycine max), 5'ss of exon 5
GCGGGTGCTCGGGACTTGTCGTTTGATTCTTATGGTTATGCTGTTGTTTTCCTGTCCAACATCACTACGGCAATATACCTTGCAACCATAGCCCGTATAGgtagaatttc----catttttattttattttttaaaaaacttccaatgacatctca--gtagcttgatttc--tttcttagatgct-gatatttt--cttttctcag
   || || || || || || |||||| | ||||| |||||   ||| |||||||| |||||||| ||||| ||||| |||||||||||||||||| | ||| | ||| |    |  | | |||            ||| |    |     | |||  |||| | || | |  |||||||  |  | |  ||| |  ||||| ||||
---GGAGCACGAGATTTATCCTTTGATGCCTATGGCTATGCCACTGTATTCCTGTCAAACATCACCACGGCTATATATCTTGCAACCATAGCCCGTGTTGGTCgtattccttgtctctctcattccgacacagtggaaattctataccttttttcattgtagttggagtgcagtttcttacttatttggcattatgtcttttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45368123|gb|CK906482.1|CK906482
EST:     GCAACCATAGCCCGTATAG                         GGAAATCTAGTGGCCTTAATAGCTTTGGCCTAATGTGGTGTGATG
genomic: GCAACCATAGCCCGTATAGgtagaatttc ... cttttctcagGGAAATCTAGTGGCCTTAATAGCTTTGGCCTAATGTGGTGTAATG