Sequence
atgc intronic sequence ATGC exonic sequenceAAAATACTTGAAATACATACAGGAAGAATCCATAAGTGCAAGTGTAGCTGAGTTTAGTTGGGACCTTAAGTATGCTGGAGCCCAAATCCTCCTCTCTAAGgttccatatttgcagtcacaactacttcatttggatttttgcaccccccaccaacttttatttttattttttaataattctttgttcttttgtggtgtgaaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G05950.1 (Glycine max), 5'ss of exon 5
AAAATACTTGAAATACATACAGGAAGAATCCATAAGTGCAAGTGTAGCTGAGTTTAGTTGGGACCTTAAGTATGCTGGAGCCCAAATCCTCCTCTCTAAGgttccatatt-tgcagtcacaactacttcatttggatttttgcaccccccaccaact--tttatttttattttttaataattctttgttcttttgtggtgt-gaaatgcag
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TGTGTATATGAAGTACATAACAGAAGAATGCATGAGTGCAAGTGTAGCAGAATTTAGTTGGGACCTTAAATATGCTGGAGCTCAAATCCTTCTCAGCCAGgtttaattttctatcatcattactctttctttctcatctttatgtgtcactgcgcttaattaatttaatccttcctctaagtcctaattaacaaatgatattgttgctcag
upper sequence: Vv04s0008g02020.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G05930.1 (Glycine max), 5'ss of exon 5
AAAATACTTGAAATACATACAGGAAGAATCCATAAGTGCAAGTGTAGCTGAGTTTAGTTGGGACCTTAAGTATGCTGGAGCCCAAATCCTCCTCTCTAAGgttccatatt-tgcagtcacaactacttcatttggatttttgcaccccccaccaactt-ttatttttat-tttttaataattctttgttcttttgtggtgt-gaaatgcag
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TGTGTATATGAAGTACATAACAGAAGAATGCATGAGTGCAAGTGTAGCAGAATTTAGTTGGGACCTTAAATATGCTGGAGCTCAAATCCTTCTCAGCCAGgtttaattttctatcatcattactctttctttctcatctttatgtgtcactgcgcttaattaatttaatgcttcctctaagtcctaattaacaaatgatatcgttgctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689427|gb|EC939263.1|EC939263EST: AGTTTAGTTGGGACCTTAAGTATGCTGGAGCCCAAATCCTCCTCTCTAAG TTTTATTTTGAAGGGGAGAAGGGTTTAGAGACATTCAAGAACCAAGCTGAC
genomic: AGTTTAGTTGGGACCTTAAGTATGCTGGAGCCCAAATCCTCCTCTCTAAGgttccatatt ... tgaaatgcagTTTTATTTTGAAGGGGAGAAGGGCTTAGAGACATTCAAGAACCAAGCTGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAATACTTGAAATACATACAGGAAGAATCCATAAGTGCAAGTGTAGCTGAGTTTAGTTGGGACCTTAAGTATGCTGGAGCCCAAATCCTCCTCTCTAAGgttccatatttgcagtcacaactacttcatttggatttttgcaccccccaccaacttttatttttattttttaataattctttgttcttttgtggtgtgaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC