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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAAATTGAATGCAACAACTGAGATGATGCCGGTGACATGGCCTGGCTTTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttaccaacattttctttacctggaagttacatgtttgtgctgtctttcttgcattaactagcaaattgacattgtttgctgttgaattatgattttttttgctag

Basic information

species Vitis vinifera
transcript Vv04s0008g01300.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G34690.1 (Glycine max), 5'ss of exon 5
AATGAAATTGAATGCAACAACTGAGATGATGCCGGTGACATGGCCTGGCTTTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttaccaacattttctttacctggaagttac-atg-tttgtgctgtctttcttgcattaactagcaaat---tgacattgtttgctgttgaattatgattttttttgctag--------------------
||||||  |||||||||||||||| |||||||| |||||||||||  ||||||| ||||||||||||||||| ||   ||| ||||| || |||||||||||| ||  | |  |||   | | ||   |   |  |||  |         |  | |  ||  |||      |   ||| | | |  | |    | |  || ||| |||  |||                     
AATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAGCTTTACTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGgtaatt--ctatgtttaaataatcttacaacaattatgactcaaagaaattcacatatatatactgttgcgtgcctgaaaatatgggatag-aagtcgtgttttctttgtctaaacaatcaaatctggtatcag

upper sequence: Vv04s0008g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G10820.1 (Glycine max), 5'ss of exon 5
AATGAAATTGAATGCAACAACTGAGATGATGCCGGTGACATGGCCTGGCTTTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttaccaacattttctttacctggaagttacatgtttgtgctgtctttcttgcattaactagcaaat---tgacattgtttgctgttgaattatgattttttttgctag---------------------
||||||  |||||||||||||||| |||||||| |||||||||||  ||||||  ||||||||||||||||| ||   ||| ||||| || |||||||||||| || |     |||   | | ||   |   | |    |     |   ||| |  ||  |||      |   ||| | | |  | |    | || || ||| |||  |||                      
AATGAAGCTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCCAGCTTTAGTGATATTCACCCTTTTGCACCAGTTGACCAGGCTCAAGGTTATCAGgtaattccggg--tttaaataatcttacaacaataaagattcaaagaaattcatagatatactgttctgtgcctgaaagtatgggatag-aagttgtgttttctttgtctaaaacaagcaaatctggtatcag

upper sequence: Vv04s0008g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G05470.1 (Glycine max), 5'ss of exon 6
AATGAAATTGAATGCAACAACTGAGATGATGCCGGTGACATGGCCTGGCTTTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttaccaacattttctttacctggaagttacatgtttgtgctgtctttcttgcattaactagcaaattgacattgtttgctgt-tgaattatgattttttttgctag
||||||  ||||||| |||||||| |||||||| |||||||||||| ||||| |  | |||||||||||||| || | ||||||||| || ||||||||||||  ||| |             ||| |      |  ||   | | | ||| |      || ||    ||  |  || |||| ||| | ||  |  |  | |  | | ||
AATGAAGCTGAATGCTACAACTGAAATGATGCCTGTGACATGGCCTAGCTTTGCTAACATTCACCCTTTTGCACCAATTGAACAGGCTCAAGGTTATCAGgtatgtacaagg-----------ctgaata----aaattaaagttctttttatacaggaaaatatgggataaatgttttttggtgtctaaacaagcaaatctggtaccag

upper sequence: Vv04s0008g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G05420.2 (Glycine max), 5'ss of exon 5
AATGAAATTGAATGCAACAACTGAGATGATGCCGGTGACATGGCCTGGCTTTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttaccaacattttctttacctggaagttacatgtttgtgctgtctttcttgcattaactagcaaattgacattgtttgctgt-tgaattatgattttttttgctag
||||||  |||| || |||||||| |||||||| |||||||||||| ||||| |  | |||||||||||||| || | ||||||||| || ||||||||||||  |||            |  ||  || ||  ||    ||||  | | |   | |  || |     ||  | ||| |||| ||| | ||  |  |  | |  |   ||
AATGAAGCTGAACGCTACAACTGAAATGATGCCTGTGACATGGCCTAGCTTTGCTAACATTCACCCTTTTGCACCGATTGAACAGGCTCAAGGTTATCAGgtatgtaca-----------tggct--aaatttaataaaagtgccttttatacagga--aaatgtgggataaatattttttggtgtctaaacaagcaaatctggtatcag

upper sequence: Vv04s0008g01300.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G33010.1 (Arabidopsis thaliana), 5'ss of exon 5
AATGAAATTGAATGCAACAACTGAGATGATGCCGGTGACATGGCCTGGCTTTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttaccaacattttctttacctggaagttacatgtttgtgctgtctttcttgcattaactagcaaattgacattgtttgctgttgaattatgattttttttgctag
 |||||| | |||||||||||||| |||||||| || ||||||||  | || || || |||||||||||||| ||   |||||| ||||| |||||||||||   |      | |||||| |        |   | || ||       |||      || |  |   || ||| ||  | | |   || ||   |              
GATGAAACTAAATGCAACAACTGAAATGATGCCAGTCACATGGCCAAGTTTCACTGACATTCACCCTTTTGCTCCTGTTGAACAAGCACAAGGTTATCAGgttagtg-----actttcttgattca----tctgaggtctga------tttagaaagttgaacaatgaactgatatcttgtccacatgtatgtag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351021943|gb|FQ437730.1|FQ437730
EST:     TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCAGAGGGTTATCAG                         GAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
genomic: TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttacca ... tttttgctagGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
EST: gi|349823675|gb|FQ415085.1|FQ415085
EST:     TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCAGAGGGTTATCAG                         GAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
genomic: TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttacca ... tttttgctagGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
EST: gi|351041949|gb|FQ456159.1|FQ456159
EST:     TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCAGAGGGTTATCAG                         GAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
genomic: TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttacca ... tttttgctagGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
EST: gi|294964293|gb|GW838096.1|GW838096
EST:     TACAGATATTCACCNCTTTTGCCCCCACTGAACAGGCAGAGGGTTATCAG                         GAAATGTTCAATAACTCGGGTGAACTATTATGTACCATCACTGGATTTGAC
genomic: TACAGATATTCACC-CTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttacca ... tttttgctagGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
EST: gi|351017898|gb|FQ439064.1|FQ439064
EST:     TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCAGAGGGTTATCAG                         GAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
genomic: TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttacca ... tttttgctagGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
EST: gi|156735605|gb|EV239719.1|EV239719
EST:     TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCAGAGGGTTATCAG                         GAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
genomic: TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttacca ... tttttgctagGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
EST: gi|349825666|gb|FQ421765.1|FQ421765
EST:     TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCAGAGGGTTATCAG                         GAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
genomic: TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttacca ... tttttgctagGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
EST: gi|349824095|gb|FQ417482.1|FQ417482
EST:     TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCAGAGGGTTATCAG                         GAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
genomic: TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttacca ... tttttgctagGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
EST: gi|349813708|gb|FQ413942.1|FQ413942
EST:     TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCAGAGGGTTATCAG                         GAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
genomic: TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttacca ... tttttgctagGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
EST: gi|351026721|gb|FQ436374.1|FQ436374
EST:     TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCAGAGGGTTATCAG                         GAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC
genomic: TTACAGATATTCACCCTTTTGCCCCCACTGAACAGGCACAGGGTTATCAGgtagttacca ... tttttgctagGAAATGTTCAATAACTTGGGTGAACTATTATGTACCATCACTGGATTTGAC