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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTCGAGATTTTGATTATCCTCGTATGAGGAAGgtatgggtatatgtagttatgcttgctcttcaatgatagtactcttagtaataagtattcaaatgtatttttctacattttctttaaattcgtttttttccctatttttttttttttaatctaatattagttgcacttgatatgctctgaaag

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G09640.1 (Glycine max), 5'ss of exon 2
TGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTCGAGATTTTGATTATCCTCGTATGAGGAAGgtatgggtatatgtagttatgcttgctcttcaatgatag--tactcttagtaataagtattcaaatgtatttttctacattttctttaaattcgtttttttccctatttttttttttttaatctaatattagttgcacttgatatgctctgaaag
||| ||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||  |||| || ||||| ||||| || |||||  |   |||| |||||| |  |||  ||| |||   | |||||          ||  ||   ||| | ||| |||| |                      ||  |||| || ||     ||  ||| || ||  | ||| ||   |||||
TGATATGCTGGAGAAAACTGCTACTCTCTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTTGAGACATTGACTACCCTCGCATGAGAAAAgtatgttt---tgtacttatgcattttctggaattataaattgctcttg---------atctaa---tatgtctctgcattat----------------------atggttttattcttggcaaaaagttaattacatcttatacgcatggaaag

upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G29410.1 (Glycine max), 5'ss of exon 6
TGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTCGAGATTTTGATTATCCTCGTATGAGGAAGgtatgggtatatgtagttatgcttgctcttcaatgatagtactcttagtaataagtattcaaatgtatttttctacattttctttaaattcgtttttttccctatttttttttttttaatctaatattagttgcacttgatatgctctgaaag
||| ||||| |||||||| |||| ||| ||||| |||||||||||| ||||||||||||||||||||||||| ||  |||| || ||||||||||| || |||||  |   |||| || ||| |  |||  ||| |||        | || | |  ||  ||   ||| | |||||||| |                      ||  |||| || ||     ||   || || |   | ||||||   | |||
TGATATGCTGGAGAAAACTGCTACTCTGTTTCGTCCAAAACTCATTGTTGCTGGTGCTAGTGCTTATCCTCGGGACATTGACTACCCTCGTATGAGAAAAgtatgttt---tgtacttgtgcattttctggaattataa-------attactcatgatctaa---tatgtctctacattat----------------------atggttttcttcttggcaaaaagctaattacttcttatatgcatgggaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877324|gb|DT026379.1|DT026379
EST:     GCTTATCCTCGAGATTTTGATTATCCTCGTATGAGGAAG                         ATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGT
genomic: GCTTATCCTCGAGATTTTGATTATCCTCGTATGAGGAAGgtatgggtat ... gctctgaaagATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGT
EST: gi|110724687|gb|EE100735.1|EE100735
EST:     CTGGTGCTAGTGCTTATCCTCGAGATTTTGATTATCCTCGTATGAGGAAG                         ATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGT
genomic: CTGGTGCTAGTGCTTATCCTCGAGATTTTGATTATCCTCGTATGAGGAAGgtatgggtat ... gctctgaaagATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGT
EST: gi|110390273|gb|EC955175.1|EC955175
EST:     TTTTGATTATCCTCGTATGAGGAAG                         ATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGT
genomic: TTTTGATTATCCTCGTATGAGGAAGgtatgggtat ... gctctgaaagATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGT
EST: gi|110384184|gb|EC948603.1|EC948603
EST:     TTTTGATTATCCTCGTATGAGGAAG                         ATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGT
genomic: TTTTGATTATCCTCGTATGAGGAAGgtatgggtat ... gctctgaaagATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGT
EST: gi|110385950|gb|EC950512.1|EC950512
EST:     TTTTGATTATCCTCGTATGAGGAAG                         ATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGT
genomic: TTTTGATTATCCTCGTATGAGGAAGgtatgggtat ... gctctgaaagATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGT