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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTTCTTAGGGGTTTCATTGGTATTCATGCTTCTATATGTCTGGAGCAGGGAGTTTCCGAATGCCCAAATTAACTTATATGGACTTGTTCAACTCAAGgtatgctggcttatatatttttgttaccaccactgcatcacaattaggttgctctattgcaactgcattacttttttatgtggctccaaccctgctatgctaatgttaataaacattcatttcttgcag

Basic information

species Vitis vinifera
transcript Vv04s0008g00510.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G35990.1 (Glycine max), 5'ss of exon 5
TCCCTTCTTAGGGGTTTCATTGGTATTCATGCTTCTATATGTCTGGAGCAGGGAGTTTCCGAATGCCCAAATTAACTTATATGGACTTGTTCAACTCAAGgtatgct---ggcttatatatttttgt-taccaccactgcatcacaattaggttgctctattgcaactgcattacttttttatgtggctccaaccctgctatgctaatgttaataaacattcatttcttgcag
 || || || |  ||  || | || || ||||| || ||||| ||||| || || ||||||||||||||||| ||| ||||||| ||||||  ||| |||||||| |     ||| | ||  || || |    |   ||||||      |||  |||||||      |   || | || |    | |  ||  |  | || || |  |   |                     
CCCATTTTTGGCAGTACCACTTGTTTTTATGCTCCTTTATGTTTGGAGTAGAGAATTTCCGAATGCCCAAATCAACATATATGGGCTTGTTGCACTTAAGgtatgtttcaatcttctgtaagttagtcttgttcttatgcatctggtacagga-gctctatcaggtatatctttcattgtctgataggacc--cttttctttgtttttcccag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351014293|gb|FQ437295.1|FQ437295
EST:     GGGAGTTTCCGAATGCCCAAATTAACTTATATGGACTTGTTCAACTCAAG                         GCATTTTATTTCCCTTGGGCAATGCTTGCTTTGGATGTTATTTTTGGTTCA
genomic: GGGAGTTTCCGAATGCCCAAATTAACTTATATGGACTTGTTCAACTCAAGgtatgctggc ... tttcttgcagGCATTTTATTTCCCTTGGGCAATGCTTGCTTTGGATGTTATTTTTGGTTCA
EST: gi|161721005|gb|FC069627.1|FC069627
EST:     GGGAGTTTCCGAATGCCCAAATTAACTTATATGGACTTGTTCAACTCAAG                         GCATTTTATTTCCCTTGGGCAATGCTTGCTTTGGATGTTATTTTTGGTTCA
genomic: GGGAGTTTCCGAATGCCCAAATTAACTTATATGGACTTGTTCAACTCAAGgtatgctggc ... tttcttgcagGCATTTTATTTCCCTTGGGCAATGCTTGCTTTGGATGTTATTTTTGGTTCA