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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGGATATGCTTGGACCTAGTTTGTGGGATGTTTGGAATAACAACTCACACACgtaagtttctttttcaaatatgtggcggaaagtgtgttatcttttagtttatatgtaacacatgcaatttactcttatctaatgtttactttcactttgtcaatttcag

Basic information

species Vitis vinifera
transcript Vv04s0008g00160.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g54100.1 (Oryza sativa), 5'ss of exon 5
GTTATGGATATGCTTGGACCTAGTTTGTGGGATGTTTGGAATAACAACTCACACACgtaagtttctttttcaaatatgtggcggaaagtgtgttatcttttagtttatatgtaacacatgcaatttactcttatctaatgtttactttcactttgtcaatttcag
|||||||||||||| ||||| ||| | ||||||||||||||||| || || ||||||| |||||     || ||| |  |     |  | |||   ||| || |||||   ||||| |     |||  | |  | |   |                         
GTTATGGATATGCTGGGACCCAGTCTTTGGGATGTTTGGAATAATAATTCTCACACgtgagttt-----tccaattta-gctaacatttatgtagacttctaatttatcactaacata----gtttgttttggttttcag-------------------------

upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g10150.2 (Oryza sativa), 5'ss of exon 5
GTTATGGATATGCTTGGACCTAGTTTGTGGGATGTTTGGAATAACAACTCACACACgtaagtttctttttcaaatatgtggcggaaagtgtgttatcttttagtttatatgtaacacatgcaatttactcttatctaatgtttactttcactttgtcaatttcag
|||||||||||| | ||||| ||  |||||||||||||||||||||| || ||| |||  |  ||||||     |   |             | |||||     ||  ||| | |   | ||||||  | | || |   |  | |||| ||              
GTTATGGATATGTTGGGACCGAGCCTGTGGGATGTTTGGAATAACAATTCCCACTCgtgggcatcttttgactcttcctaat----------taatcttgacagttcaatgcagccttttcaattt--tttaatttgtggccttcttttacag------------

upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G120951_T01 (Zea mays), 5'ss of exon 5
GTTATGGATATGCTTGGACCTAGTTTGTGGGATGTTTGGAATAACAACTCACACACgtaagtttctttttcaaatatgtggcggaaagtgtgttatcttttagtttatatgtaacacatgcaatttactcttatctaatgtttactttcactttgtcaatttcag
|||||||||||||| ||||| ||| |||||||||| |||||||| || || |||| || |||     |||  | |        ||     | ||  |||||||||||    |||||    || | |  | ||| |                              
GTTATGGATATGCTCGGACCCAGTCTGTGGGATGTCTGGAATAATAAATCTCACATgtgagtcatagttttgagtgaacacgtga-----tattgacttttagtttaccgttaacat---cattcttttgttagcag----------------------------

upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 5'ss of exon 5
GTTATGGATATGCTTGGACCTAGTTTGTGGGATGTTTGGAATAACAACTCACACACgtaagttt---ctttttcaaatatgtggcggaaagtgtgttatcttttagttt----atatgtaacacatgcaa-tttactcttatcta--atgtttactttcactttgtcaat-ttcag------------------------------
||||||||||| ||||| ||||| || ||||||||||||||||  | | | ||  |||||   |   || |   ||| || |     |   |||   ||||     |||    ||||| | ||     ||   || | ||  ||   |||    |||  |  |||       |||                               
GTTATGGATATCCTTGGGCCTAGCTTATGGGATGTTTGGAATAGTACCACCCAGGCgtaaacattcactctgagaaacatttactttattttgtagcatctgaagattttgttatatgaaccattgataaacataatttttcctgagatgagcccttcaatattggtggcactcaccatatgatttgtgtgttttatacattccag

upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S39_28V6.1 (Physcomitrella patens), 5'ss of exon 2
GTTATGGATATGCTTGGACCTAGTTTGTGGGATGTTTGGAATAACAACTCACACACgtaagtttctttttcaaatatgtggcggaaagtgtgttatcttttagtttatatgtaacacatgcaatttactcttatctaatgtttactttcactttgtcaatttcag
 | | ||||||||||||||| ||| | ||||||||||||||          ||  || |||| | |    ||| |   |      ||    ||       |||                                                              
ATCAGGGATATGCTTGGACCAAGTCTCTGGGATGTTTGGAACTCTTCAGATCAAGCgcaagtatttaaggcaactcgttctaatcaaacaagtatgtacatag--------------------------------------------------------------

upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ38433 (Selaginella moellendorffii), 5'ss of exon 4
GTTATGGATATGCTTGGACCTAGTTTGTGGGATGTTTGGAATAACAACTCACACACgtaagtttctttttcaaatatgtggcggaaagtgtgttatcttttagtttatatgtaacacatgcaatttactcttatctaatgtttactttcactttgtcaatttcag------
            || |     |   |  |||  ||   | | |     | ||  ||||||   |  |   ||    || |||  |   ||||  || | |     |       |||   | || |  ||||| ||   | | |  |   | | || ||||||         
------------CTCGAGTGCACCATAAGGGGCGTCAAGGAGA-----TTAC-TACGTAATGGTTATGGACATGCTTG-GGCCTAGCTTGTGGGATGTGTGGAACTCGTCAGGACAAGCgtaagtagctctt-tcgcctctctcgtcctaatctgccaatttttttaacag

upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ31718 (Selaginella moellendorffii), 5'ss of exon 4
GTTATGGATATGCTTGGACCTAGTTTGTGGGATGTTTGGAATAACAACTCACACACgtaagtttctttttcaaatatgtggcggaaagtgtgttatcttttagtttatatgtaacacatgcaatttactcttatctaatgtttactttcactttgtcaatttcag------
            || |     |   |  |||  ||   | | |     | ||  ||||||   |  |   ||    || |||  |   ||||  || |||     |       |||   | || |  ||||| ||   |   |  |   | | || ||||||         
------------CTCGAGTGCACCATAAGGGGCGTCAAGGAGA-----TTAC-TACGTAATGGTTATGGACATGCTTG-GGCCTAGCTTGTGGGATGTTTGGAACTCGTCAGGACAAGCgtaagtagctctt-tcgcctccctcgtcctaatctgccaatttttttaacag