1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACACAGTGCTATAAGCAAGCACCTTGATGTGGAGGAGCTTGAAATGCTCTTGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaactccaacattggttctgaattcttccatttctaggtctgtcgtatcaatttaatcttgacatggtgttagtttaaatattctctgtgactgt...
species | Vitis vinifera |
transcript | Vv03s0091g01190.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACG CTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGATEST: gi|351027956|gb|FQ425857.1|FQ425857
genomic: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaact ... tactcacaagCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
EST: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACG CTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGATEST: gi|352794343|gb|FQ481574.1|FQ481574
genomic: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaact ... tactcacaagCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
EST: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACG CTGGGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGATEST: gi|110409686|gb|EC975355.1|EC975355
genomic: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaact ... tactcacaagCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
EST: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACG CTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGATEST: gi|351023983|gb|FQ423406.1|FQ423406
genomic: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaact ... tactcacaagCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
EST: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACG CTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGATEST: gi|30324516|gb|CD007778.1|CD007778
genomic: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaact ... tactcacaagCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
EST: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACG CTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGATEST: gi|161714654|gb|FC063889.1|FC063889
genomic: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaact ... tactcacaagCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
EST: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACG CTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGATEST: gi|110386295|gb|EC950878.1|EC950878
genomic: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaact ... tactcacaagCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
EST: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACG CTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGATEST: gi|351016631|gb|FQ424058.1|FQ424058
genomic: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaact ... tactcacaagCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
EST: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACG CTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGATEST: gi|349829589|gb|FQ421107.1|FQ421107
genomic: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaact ... tactcacaagCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
EST: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACG CTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
genomic: TGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaact ... tactcacaagCTGAGGGAGTACGTGGATGACACGGAGGACTACATCAACATAATGCTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACAGTGCTATAAGCAAGCACCTTGATGTGGAGGAGCTTGAAATGCTCTTGGAGGCATATTTTGTGCAAATTGATGGTACACTGAACAAACTATCCACGgtatgcaactccaacattggttctgaattcttccatttctaggtctgtcgtatcaatttaatcttgacatggtgttagtttaaatattctctgtgactgt
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG