1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AATGAGAAGATGGAGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtattaacattagttatatgtggcattttttgcttatatttattaattatggatgtttcttggaatcaagtgacaggttcctagctgttccaccag...
species | Vitis vinifera |
transcript | Vv03s0091g00700.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACT-TTGGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGGCATATGGTCAEST: gi|110396404|gb|EC962089.1|EC962089
genomic: GACTGTT-GGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCAC-GGCATATGGTCA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|27579693|gb|CB002388.1|CB002388
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|110713462|gb|EE089402.1|EE089402
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: GACTGGTTGGATCTGAA-CTGANGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCEST: gi|26267312|gb|CA818375.1|CA818375
genomic: GACTG-TTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGC
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|30321875|gb|CD005137.1|CD005137
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|110686908|gb|EE063865.1|EE063865
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGANGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCAGACGTEST: gi|28968092|gb|CB347125.1|CB347125
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGT
EST: AGACTGTTGGATTTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TTCTGCAAGTCGGACGTTTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|110391380|gb|EC956351.1|EC956351
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|26264295|gb|CA815358.1|CA815358
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|30321951|gb|CD005213.1|CD005213
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|351025662|gb|FQ426676.1|FQ426676
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|351030338|gb|FQ432276.1|FQ432276
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|110361742|gb|EC925238.1|EC925238
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAATTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|22007314|gb|BQ792348.1|BQ792348
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|27578583|gb|CB001278.1|CB001278
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|26257779|gb|CA808842.1|CA808842
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|110685602|gb|EE062466.1|EE062466
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|26264973|gb|CA816036.1|CA816036
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: TGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|26258048|gb|CA809111.1|CA809111
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|26267206|gb|CA818269.1|CA818269
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: TGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGCACGTCTATACAGTGAACTGTGGCACGGCATATGEST: gi|110388571|gb|EC953335.1|EC953335
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATG
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAEST: gi|110395310|gb|EC960968.1|EC960968
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
EST: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCG TACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
genomic: AGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtatta ... ctgcctgaagTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGAGAAGATGGAGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtattaacattagttatatgtggcattttttgcttatatttattaattatggatgtttcttggaatcaagtgacaggttcctagctgttccaccag
- - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatcaa