Sequence
atgc intronic sequence ATGC exonic sequenceGCATTCAATATTCTGCGGTATGAGATTGGGCAGAGGTATAATTCACATTATGATGCATTCAACCCAGCTGAATATGGACCACAAACAAGCCAAAGGgtacttactaatcaagcttttttttggagcatgatagtgtgctaagtaactacattttttcttgtctttactttcatgaatgactatagaaagtactgtataccttctattgctttgtattcctacatggagatcatgttctgcacaattagaaatgctttttgatgggtctatgatatattgtctgatgctattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0091g00520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g55380.1 (Oryza sativa), 5'ss of exon 5
GCATTCAATATTCTGCGGTATGAGATTGGGCAGAGGTATAATTCACATTATGATGCATTCAACCCAGCTGAATATGGACCACAAACAAGCCAAAGGgtac-ttactaatcaagcttttttttggagcatgatagtgtgctaagtaactacattttttcttgtctttactttcatgaatgactatagaaagtactgtataccttctattgctttgtattcctacatggag-atcatgttctgcacaattagaaatgctttttgatgggtctatgatatattgtctgatgctattgcag
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CCCTTTAATATCCTGCGCTATGAGATTGGACAGAGGTATGCTTCGCATTATGACGCATTCGACCCAGCTCAGTATGGTCCACAAAAAAGTCAAAGGgtatgctcctacatttgcttgcattttgcctaacctatatttctcggtt-ctagatgtcttgaagattgggctctttttgttatttatgtgaacagaggtgctaagtctgct-taatggaccactagatagaataatttaggttgaatgatttgacaagaatatagctaag-----gaactattgaaatgcaaattttcag
upper sequence: Vv03s0091g00520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G348578_T01 (Zea mays), 5'ss of exon 5
GCATTCAATATTCTGCGGTATGAGATTGGGCAGAGGTATAATTCACATTATGATGCATTCAACCCAGCTGAATATGGACCACAAACAAGCCAAAGGgtacttactaatcaagcttttttttggagcatgatagtgtgctaagtaac-tacattttttcttgtctttact--ttcatgaatgactatagaaagtactgtataccttctattgctttgtattcctacatggagatcatgttctgcacaattagaaatgctttttgatgggtctatgatatattgtctgatgctattgcag
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CCATTTAATGTCCTGCGGTATAATATTGGACAAAGGTATGCTTCACATTATGACGCATTTGACCCAGCTCAGTATGGTCCACAAAAAAATCAAAGGgtatgtagcaattt-gcttgctccaagctaacttcagcatcagttgtgatgtgcgaactgaattactttaactctttcaagaacaaataaagtagaaaatg-----------------------------------------------------------------------------------------------------
upper sequence: Vv03s0091g00520.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G33910.1 (Arabidopsis thaliana), 5'ss of exon 5
GCATTCAATATTCTGCGGTATGAGATTGGGCAGAGGTATAATTCACATTATGATGCATTCAACCCAGCTGAATATGGACCACAAACAAGCCAAAGGgtacttactaatcaagcttttttttggagcatgatagtgtgctaagtaactacattttttcttgtctttactttcatgaatgactatagaaagtactgtataccttctattgctttgtattcctacatggagatcatgttctgcacaattagaaatgctttttgatgggtctatgatatattgtctgatgctattgcag
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TCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGgtaa--aatccttaaatctgtcat----atttatagctttctttagaacccgagacctcatttgaatttacgcag----------------------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30134078|gb|CB919416.1|CB919416EST: ATTATGATGCATTCAACCCAGCTGAATATGGACCACAAACAAGCCAAAGG GTTGCTTCCTTCTTGTTGTATCTATCTGATGTAGAAGAAGGTGGAGAAACT
genomic: ATTATGATGCATTCAACCCAGCTGAATATGGACCACAAACAAGCCAAAGGgtacttacta ... gctattgcagGTTGCTTCCTTCTTGTTGTATCTATCTGATGTAGAAGAAGGTGGAGAAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATTCAATATTCTGCGGTATGAGATTGGGCAGAGGTATAATTCACATTATGATGCATTCAACCCAGCTGAATATGGACCACAAACAAGCCAAAGGgtacttactaatcaagcttttttttggagcatgatagtgtgctaagtaactacattttttcttgtctttactttcatgaatgactatagaaagtactgtataccttctattgctttgtattcctacatggagatcatgttctgcacaattagaaatgctttttgatgggtctatgatatattgtctgatgctattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA