Sequence
atgc intronic sequence ATGC exonic sequenceTATGCTTAGTGAAGGGAGTGATGTCTATAGTTTTGGAGTTCTACTTATGGAGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAGgtgaaaacaagtttttttccatggttgtgtgcatcaatttcatacactgctactctgtcataacactattctcattgcctgggtttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G12570.1 (Glycine max), 5'ss of exon 5
TATGCTTAGTGAAGGGAGTGATGTCTATAGTTTTGGAGTTCTACTTATGGAGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAGgtgaaaacaagtttttttccatggttgtgtgcatcaatttcata-----cactgctactctgtcataacactattctcattgcctgggtttcag
|||||||| ||| | |||||||| ||||| ||||||||||| || ||||||||||| || ||||| ||||| |||||||||| |||||| ||||||||||| ||||| | | ||| || | | ||| |||| ||| | ||| |||| | || | ||| || | ||||
TATGCTTAATGAGCGCAGTGATGTATATAGCTTTGGAGTTCTTCTCATGGAGATAATCACAGGAAGAAGCCCCATTGATTATTCAAGACCACCTGGAGAGgtgattctgggttttgt-caatgttttcattagttcattccataagaaacaccatcatgaagtcttaactatgtttttgttga-tgtgcctcag
upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G01440.1 (Glycine max), 5'ss of exon 5
TATGCTTAGTGAAGGGAGTGATGTCTATAGTTTTGGAGTTCTACTTATGGAGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAGgtgaaaacaagtttttttccatggttgtgtgcatcaatttcatacactgctactctgtc--ataacactattctcattgcctgggtttcag
|||||||| ||| || || ||||| ||||||||||| ||||||| |||||| ||||||| |||||||| || |||||||||| |||||| ||||||||||| |||| ||| ||||| || | || || | | | | | | ||| || | || | ||| | |||||||
TATGCTTAATGAGGGAAGCGATGTGTATAGTTTTGGGATTCTACTGATGGAGTTAATTACAGGAAGGAGTCCCATTGATTATTCTAGACCACCTGGAGAGgtgatt-caaggatttctccatattttctttaatgtatcccgtgaaaatccaatgagtcttatgtgtgtgttttgtttgtcgttgtttcag
upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G01490.1 (Glycine max), 5'ss of exon 5
TATGCTTAGTGAAGGGAGTGATGTCTATAGTTTTGGAGTTCTACTTATGGAGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAGgtgaaaacaagtttttttccatggttgtgtgcatcaatttcatacactgctactctgtcataacactat-tctcattgcctgggtttcag
|||||||| ||| || || ||||| ||||||||||| ||||||| |||||| ||||||| |||||||| || |||||||||| |||||| ||||||||||| | | ||| | ||| || | || || | | | | | ||| || | | | | || || |||||
TATGCTTAATGAGGGAAGCGATGTGTATAGTTTTGGGATTCTACTGATGGAGCTAATTACAGGAAGGAGTCCCATTGATTATTCTAGACCACCTGGAGAGgtgattcaaggatttctcccaaatttcttca-atgtatcccttgaaaatccaacgagtcttatgtgtgtgttttgtttggtgtccttcag
upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G04780.1 (Glycine max), 5'ss of exon 5
TATGCTTAGTGAAGGGAGTGATGTCTATAGTTTTGGAGTTCTACTTATGGAGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAGgtgaaaacaagtttttttccatggttgtgtgcatcaatttcatac--actgctactctgtcataacactattctcattgcctgggtttcag
|||||||| ||| | |||||||| ||||| ||||||||||| || ||||||||||| || ||||| ||||| |||||||||| |||||| |||||||||| | ||||| | | ||| || | | ||| |||| | | | ||| || | | || | || || ||||
TATGCTTAATGAGCGCAGTGATGTGTATAGCTTTGGAGTTCTTCTCATGGAGATAATCACAGGAAGAAGCCCCATTGATTATTCAAGACCACCCGGAGAGgtgattccgggttttgt-caatgttttcattagttcattccataagaaacaccatcaagtcttacctatgtttttgtt-tatgttcctcag
upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G34500.1 (Arabidopsis thaliana), 5'ss of exon 5
TATGCTTAGTGAAGGGAGTGATGTCTATAGTTTTGGAGTTCTACTTATGGAGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAGgtgaaaacaagtttttttccatggt------tgtgtgcatcaatttcatacactgctactctgtcataacactattctcattgcctgggtttcag
|||||| | ||| | ||||||||||| ||||| || ||||| || |||||||| ||||| ||||||||||| ||||||||||| ||||| ||| ||||| | || ||| | | | | ||| ||||| | || | | | | ||| ||
TATGCTCAATGAGTGTAGTGATGTCTACAGTTTCGGTGTTCTGCTCATGGAGATCATTACAGGAAGGAGCCCAGTTGATTATTCAAGACCGCCTGGCGAGgtaattgaaaacgtttgtaagtaacaaaacctttacctgccaagaccatacgcaaataattgtttgttgaaacatttgcag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110370362|gb|EC929508.1|EC929508EST: AGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAG ATGAACTTAGTTGATTGGTTTAAAGGAATGGTAGCTGGTCGTCGTGGAGAA
genomic: AGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAGgtgaaaacaa ... tgggtttcagATGAACTTAGTTGATTGGTTTAAAGGAATGGTAGCTGGTCGTCGTGGAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGCTTAGTGAAGGGAGTGATGTCTATAGTTTTGGAGTTCTACTTATGGAGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAGgtgaaaacaagtttttttccatggttgtgtgcatcaatttcatacactgctactctgtcataacactattctcattgcctgggtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA