Sequence
atgc intronic sequence ATGC exonic sequenceTCCTAATGAAGTGGAAGAAAAAGCTGGAGAGGATCAATTATTTGAGGAAGTGACATTTGATCGATGCTTCTACATATACGGGGGACCAGAGCAATTGGAGgttacttctttatgtttggaacttgatttctttaagtgtgttagtgattgaatgattgttttactaaaagtgctgaactatgatggttctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G01190.1 (Glycine max), 5'ss of exon 7
TCCTAATGAAGTGGAAGAAAAAGCTGGAGAGGATCAATTATTTGAGGAAGTGACATTTGATCGATGCTTCTACATATACGGGGGACCAGAGCAATTGGAGgttacttctttatgtttggaacttg---atttctttaagtgt-gttagtgattgaatgattgttttactaaaagtgctgaactatgatggttctcag------
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TAAAAAAGAAGGTGAAGAACAAAATGATGAGGATCAATTATTAGAGGAAGTGACTTTTGATCGATGCTTTTACATTTATGGAGGTCCAGAACAATTGGAGgtattcttatcgtcaaaagatatagaaaaattctcaaaatatcatttctgtatg--ttatagaatatcttagagtatcttaa-atgattttcttaaaccaaca
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G29660.1 (Glycine max), 5'ss of exon 5
TCCTAATGAAGTGGAAGAAAAAGCTGGAGAGGATCAATTATTTGAGGAAGTGACATTTGATCGATGCTTCTACATATACGGGGGACCAGAGCAATTGGAGgttacttctttatgtttggaacttgatttctttaagtgtgttagtgattgaatgattgttttactaaaagtgctgaactat----gatggttctcag---------
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TAAAAAAGAAGGTGAAGAAGAAAATGATGAGGATCAATTATCAGAGGAAGTGACTTTTGATCGATGCTTTTACATTTATGGAGGTCCAGAACAATTGGAGgta--ttcttattgtcaaaa----gatatataaaaattctcataatatcatttctgtatcttatagaatattttagagtatcttaagtgattttcttgaaccaaca
upper sequence: Vv03s0063g01360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G15860.2 (Arabidopsis thaliana), 5'ss of exon 6
TCCTAATGAAGTGGAAGAAAAAGCTGGAGAGGATCAATTATTTGAGGAAGTGACATTTGATCGATGCTTCTACATATACGGGGGACCAGAGCAATTGGAGgttacttctttatgtttggaacttgatt-tctttaagtgtgttagtgattgaatgattgttttactaaaagtgctgaac-tatgatggttctcag
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TGGAGCTGAGAAGGATAGGGTAGACTTTAAGGATCAAGTACTTGAGGAGGTTACATTTGATCGATGCTTTTACATTTATGGTGGTCCTGAGCAGCTTGAGgtgacctacttatctctgaaaaccacctgtctattcattcttggataatcgatt--ttgtcttccctcaatttttcaatgcatggtactt-tcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110414982|gb|EC980849.1|EC980849EST: TGACATTTGATCGATGCTTCTACATATACGGGGGACCAGAGCAATTGGAG GAATTGGAGGCATTGTC
genomic: TGACATTTGATCGATGCTTCTACATATACGGGGGACCAGAGCAATTGGAGgttacttctt ... tggttctcagGAATTGGAGGCATTGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCTAATGAAGTGGAAGAAAAAGCTGGAGAGGATCAATTATTTGAGGAAGTGACATTTGATCGATGCTTCTACATATACGGGGGACCAGAGCAATTGGAGgttacttctttatgtttggaacttgatttctttaagtgtgttagtgattgaatgattgttttactaaaagtgctgaactatgatggttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG