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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGTGGAAATGGGAATAAATCCCGCAGAAATCGCGCTCCGCAGAACCATAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACTgtaaatttcccatacttggtctctcactagtgtagacatttcttttctcttttggtatcgtctctcacatagaccgcttgctttacag

Basic information

species Vitis vinifera
transcript Vv03s0038g04760.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360400|gb|EC923471.1|EC923471
EST:     TAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACT                         CAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGC
genomic: TAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACTgtaaatttcc ... tgctttacagCAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGC
EST: gi|33408116|gb|CF213743.1|CF213743
EST:     TAAGCGCCCCAGTATCAATCCCTGACACTTTTCTGGACTCCTGCTTCACT                         CAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGC
genomic: TAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACTgtaaatttcc ... tgctttacagCAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGC
EST: gi|110357551|gb|EC921175.1|EC921175
EST:     TAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACT                         CAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGC
genomic: TAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACTgtaaatttcc ... tgctttacagCAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGC
EST: gi|110416436|gb|EC982418.1|EC982418
EST:     TAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACT                         CAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGC
genomic: TAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACTgtaaatttcc ... tgctttacagCAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGC
EST: gi|110358413|gb|EC922605.1|EC922605
EST:     TAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACT                         CAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGC
genomic: TAAGCGCCCCAGTATCAATCCCTGATACTTTTCTGGACTCCTGCTTCACTgtaaatttcc ... tgctttacagCAAATCCAGCCCTCTTCAACCTGGGATGCTGATTTACAAAACCTTTACGGC