Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCTAGCCAAACATCAGGGACGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttataatagcttcaagttattaattctgtaatttttctctgtcaaagaatctaagtaaacttggttaaattgaacttttgttcatagcagataat...

Basic information

species Vitis vinifera
transcript Vv03s0038g02940.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G43020.2 (Glycine max), 5'ss of exon 4
TTTGCTAGCCAAACATCAGGGACGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttataatagcttcaagttattaattctgtaatttttc-tctgtcaaagaatctaagtaaacttggttaaattgaacttttgttcatagcagataat
 |  || ||||| ||||||||| | ||||||||||||||  |||||||||| |||||| | || ||||| || ||||||||||||||||| || ||||||||||||  |  |   ||   |||      ||  || |  | | ||| |||   | | |  ||    |||                                
GTGTCTGGCCAAGCATCAGGGAAGGGCTCATAAGTTGGCTGTTGAGCCTGGTAGCCCTCATATCTTTTATACCTGTGGTGAAGATGGATTAGTGCAGCATgtgagtcttttttcttttttgtttacccctccttagtcatccatctctcactaattgtgtgt---tttgacag----------------------------

upper sequence: Vv03s0038g02940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G23960.1 (Glycine max), 5'ss of exon 3
TTTGCTAGCCAAACATCAGGGACGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttataatagcttcaagttattaattctgtaatttttctctgtcaaagaatctaagtaaacttggttaaattgaacttttgttcatagcagataat
 |  || ||||| ||||| ||| | |||||||||||||| ||||||||||| |||||| | || ||||| || ||||||||||||||||| || |||| ||||||| ||            | |||  ||   || ||||| |  || |    || ||  |     |  |   | | |   |||  |  |  |||     
GTGTCTGGCCAAGCATCAAGGAAGGGCTCATAAGTTGGCTATTGAGCCTGGTAGCCCTCATATTTTTTATACCTGTGGTGAAGATGGATTAGTGCAGCGTgtgagtcat------------tcatttctttcctacttttttt--gttattttatttat-tgtttatcctctcactaagtgttttcttttgacag-----

upper sequence: Vv03s0038g02940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G35140.1 (Arabidopsis thaliana), 5'ss of exon 3
TTTGCTAGCCAAACATCAGGGACGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttataatagcttcaagttattaattctgtaatttttctctgtcaaagaatctaagtaaacttggttaaattgaacttttgttcatagcagataat
|||  | |     ||||| ||||||||||||||  |    || ||||| || | |||  | ||||||||||| ||||||||||||||||| || || | |||||||  |||  ||| ||  | | |  || ||  || |   |  ||  |    | ||| |  | ||    | |||| | | |||  |||          
TTTCTTGGGATTGCATCAAGGACGAGCTCATAAACTATGTATAGAGCCAGGAAACCCACATATATTTTACACATGTGGTGAAGATGGATTAGTACAACGTgtgagtagtaa--gctgca--tcactg-ttttgatatctactttagt--atccttataatttga-ttaaagacattggattgttgcccattttcag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349815474|gb|FQ400630.1|FQ400630
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349822426|gb|FQ412690.1|FQ412690
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349815995|gb|FQ403592.1|FQ403592
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351051654|gb|FQ451003.1|FQ451003
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351039928|gb|FQ464966.1|FQ464966
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349820719|gb|FQ408548.1|FQ408548
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349810577|gb|FQ402820.1|FQ402820
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349817998|gb|FQ407987.1|FQ407987
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349821392|gb|FQ411013.1|FQ411013
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351036968|gb|FQ459490.1|FQ459490
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349818261|gb|FQ409036.1|FQ409036
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349809693|gb|FQ398342.1|FQ398342
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349817545|gb|FQ407335.1|FQ407335
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349816971|gb|FQ405097.1|FQ405097
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351031899|gb|FQ460156.1|FQ460156
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351043572|gb|FQ451503.1|FQ451503
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|352798593|gb|FQ480618.1|FQ480618
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349820281|gb|FQ403897.1|FQ403897
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351033723|gb|FQ462253.1|FQ462253
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351046337|gb|FQ448642.1|FQ448642
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349819374|gb|FQ412268.1|FQ412268
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349817944|gb|FQ407933.1|FQ407933
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349819681|gb|FQ402618.1|FQ402618
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351038681|gb|FQ464547.1|FQ464547
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349811504|gb|FQ409500.1|FQ409500
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349809383|gb|FQ411881.1|FQ411881
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349819338|gb|FQ412232.1|FQ412232
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349816882|gb|FQ405008.1|FQ405008
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351039519|gb|FQ461386.1|FQ461386
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349808870|gb|FQ406720.1|FQ406720
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349809319|gb|FQ401087.1|FQ401087
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349812867|gb|FQ410509.1|FQ410509
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349813460|gb|FQ413694.1|FQ413694
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349811644|gb|FQ409641.1|FQ409641
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349811798|gb|FQ410595.1|FQ410595
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351036948|gb|FQ459470.1|FQ459470
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351043960|gb|FQ431391.1|FQ431391
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349815458|gb|FQ400613.1|FQ400613
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349819237|gb|FQ412131.1|FQ412131
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349811249|gb|FQ406237.1|FQ406237
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349813415|gb|FQ413649.1|FQ413649
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351036545|gb|FQ457258.1|FQ457258
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349829063|gb|FQ419595.1|FQ419595
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349824000|gb|FQ417387.1|FQ417387
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349814815|gb|FQ410038.1|FQ410038
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349814429|gb|FQ398869.1|FQ398869
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351056352|gb|FQ454213.1|FQ454213
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCGGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349824675|gb|FQ413342.1|FQ413342
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349810802|gb|FQ403045.1|FQ403045
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351041811|gb|FQ456021.1|FQ456021
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349813512|gb|FQ413746.1|FQ413746
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349811783|gb|FQ410580.1|FQ410580
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|349818574|gb|FQ403209.1|FQ403209
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
EST: gi|351033464|gb|FQ462115.1|FQ462115
EST:     GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCAT                         ATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT
genomic: GGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttata ... attcttacagATTGACCTGAGATCTAGGGCAGCTACAGAACTTTTGACATGCCATCAAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGCTAGCCAAACATCAGGGACGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCTTACATATTTTACACTTGTGGTGAAGATGGATTGGTTCAGCATgtgagttataatagcttcaagttattaattctgtaatttttctctgtcaaagaatctaagtaaacttggttaaattgaacttttgttcatagcagataat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagataa