Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttcttttagttggaacctatgttatggcatttgttatatggttgatgcacttcagattcttaattaacctatctacgatgataacaaataacttaatcctgcag

Basic information

species Vitis vinifera
transcript Vv03s0038g00750.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00750.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA04G00980.1 (Glycine max), 5'ss of exon 4
TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttcttttagttggaacctatgttatggcatttgttatatggttgatgcacttcagattcttaattaacctatctacgatgataacaaataacttaatcctgcag
||||||||||||| |||| ||||||||| ||||||||||| ||||| |     | |||  | |    |||    |   |||||||   | ||      | |  ||  || | |   | ||  | | |    ||||| |||||
TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagtt-ttttaat----gcatattctttaatctttccactgatgttgatg---tccaa----ctgacaaaagtaacaagagtaatgtcgagtg---taatcttgcag

upper sequence: Vv03s0038g00750.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G34630.2 (Glycine max), 5'ss of exon 5
TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctttta--gttggaacctatgttatggcatttgttatatggttgatgcacttcagattcttaattaacctatctacgatgataacaaataacttaatcctgcag
|||| |||||||| |||||||||||||| ||||||||||| | | |  |||| |   | | ||||     ||  | | |  |  | ||   |     |||| | |      | |   ||  |||||   |  |||||  |||||
TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttgtcatggttgaactgttttttattttgcttacttt-tattccaggcgaatatatatcttgagt------tttcaaattctaacat-cagtttaatt-tgcag

upper sequence: Vv03s0038g00750.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G05030.1 (Glycine max), 5'ss of exon 5
TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctttta-gttggaacctatgttatggcatttgttatatggttgatgcacttcagattcttaattaacctatctacgatgataacaaataacttaatcctgcag
|||| |||||||| |||||||||||||| ||||||||||| | | | | | ||||   |||| |   ||||    ||   ||  | ||  | |   | |   || |  | || |  ||  |||||   |  |||||  |||||
TTATCATGCCTCCATCAGCCCTTGACCGTCTAGgttagttttgtcatggttgaac---tgtttttttattttgcttacttttattccaggtgaatatatagcttgagttttcaa--attctaacatcaagtttaatt-tgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687487|gb|EE064951.1|EE064951
EST:     TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG                         CTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
genomic: TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctt ... aatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
EST: gi|30126806|gb|CB912145.1|CB912145
EST:     TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG                         CTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
genomic: TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctt ... aatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
EST: gi|110698550|gb|EE076176.1|EE076176
EST:     TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG                         CTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
genomic: TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctt ... aatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
EST: gi|26262376|gb|CA813439.1|CA813439
EST:     TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG                         CTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
genomic: TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctt ... aatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
EST: gi|26262164|gb|CA813227.1|CA813227
EST:     TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG                         CTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
genomic: TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctt ... aatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
EST: gi|71856948|gb|DT006003.1|DT006003
EST:     TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG                         CTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
genomic: TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctt ... aatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
EST: gi|110724233|gb|EE099882.1|EE099882
EST:     TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG                         CTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
genomic: TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctt ... aatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
EST: gi|110723124|gb|EE100074.1|EE100074
EST:     TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG                         CTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
genomic: TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctt ... aatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
EST: gi|294966730|gb|GW837749.1|GW837749
EST:     TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG                         CTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
genomic: TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctt ... aatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
EST: gi|71868328|gb|DT017383.1|DT017383
EST:     TTATAATGCCTCCCTCAGCCCTTGACCGCCTAG                         CTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG
genomic: TTATAATGCCTCCCTCAGCCCTTGACCGCCTAGgttagttctt ... aatcctgcagCTTCTCTTCATATTGATTATCCCATGTTGTTCGAACTTAGTAATCCTGCTG