Sequence
atgc intronic sequence ATGC exonic sequenceCTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatacatcttgtatttgacattatattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0236g00150.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G107575_T01 (Zea mays), 5'ss of exon 4
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatacatcttgtatttgacattatattgcag
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CTTTTCGATGTCAAGAAAAGGGGTGTCATTGATTTTGGTGACTTTGTCCGAGCTCTAAATGTGTTTCATCCAAATATCCCAATGGAAGAAAAAGTCGATTgtaggttt--ttatccttttc--atttcatttcatt--atgatttttatctcatctttctaaaaa-gtttgaactacctgacag-----------------------------
upper sequence: Vv02s0236g00150.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G015324_T05 (Zea mays), 5'ss of exon 4
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatacatcttgtatttgacattatattgcag
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CTTTTCGATGTCAAGAAAAGGGGTGCCATTGATTTTGGTGACTTTGTCCGAGCTCTAAATGTGTTTCATCCAAATATCCCAATGGATGAAAAAATTGATTgtaggtt--cttatcctttta---tttcatttcattgt----------gatttgttttatctcatctttctaa--aaagttcgaactacctgacag-----------------
upper sequence: Vv02s0236g00150.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G05580.1 (Glycine max), 5'ss of exon 5
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac-ttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatacatcttgtatttgacattatattgcag
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TTATTTGATGTCAAGAAGAAGGGAGTCATTGACTTCGAAGACTTTGTTAGATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaagttcaaatcctcaactcg---tgatttatcggaaattctttaccgttatcta-agttgttctga-tacatt-------aggttg-gtttggtatcttgtttcag
upper sequence: Vv02s0236g00150.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G17615.2 (Arabidopsis thaliana), 5'ss of exon 4
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatacatcttgtatttgacattatattgcag
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ATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTgtaagttgacataagat---------------agtttcatatataggtgt----ttat-tgaagcttttgtgaagagattt--attgattctg-gtctgccattttttctcag
upper sequence: Vv02s0236g00150.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G47100.1 (Arabidopsis thaliana), 5'ss of exon 5
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatacatcttgtatttgacattatattgcag
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TTATTTGATGTTAAACGAAAAGGCGTAATTGATTTTGGAGACTTTGTGAGATCACTCAATGTTTTCCATCCTAATGCTTCCCTAGAGGAGAAAACAGACTgtaagttgacc---cataaacgagtttatatccatcgtcgtttctctaaagccttgctgtacttttattcatgttattctgtatttcatatatcag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|45771421|gb|CN007273.1|CN007273EST: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATT TTTCATTCAAGCTCTATGATCTGGATAGCACAGGATTCATTGAGCGGCAAG
genomic: GTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttac ... tatattgcagTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatacatcttgtatttgacattatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG