Sequence
atgc intronic sequence ATGC exonic sequenceTAACCTACGAACAAAATTTTGGGGACGATCAATTCAGCTCGACCCTGTGGGAGTTTTGACCCTTGAGTTTGATGATGGTGAGGTTTTCAAATGGAGCAAGgtgtgtgctgctgctattgtgcttgtgcaagaaatattgcttgcttgtgtgttttcattttttggatacctgttttttgaggggaaaaaaaaaaaaaaaatctaaaatgtgtttatattgtccttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 7
TAACCTACGAACAAAATTTTGGGGACGATCAATTCAGCTCGACCCTGTGGGAGTTTTGACCCTTGAGTTTGATGATGGTGAGGTTTTCAAATGGAGCAAGgtgtgtgctgctg--ctattgtgcttgtgcaagaaatattgcttgcttgtgtgttttcattttttggatacctgttttttgaggggaaaaaaaaaaaaaaaatctaaaatgtgtttatattgtccttag
|||| | || |||| ||||||||| | ||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||| | || | ||||||||||| | | | | || || | || | ||| | ||| || || | | | | || |||||||||||| | | |
TAACATTCGGTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGACCCAGTGGGAGTTCTGACCCTAGAGTTTGATGATGGTGAAATATTTCAGTGGAGCAAGgtataaatcgtaaaatgactctgtttactttaactatgtatactgccta-gtgcttgtgacttcc-----tccggtctcaaagtagaaaaaaaaaaacttatttca-----------------------
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G04340.2 (Glycine max), 5'ss of exon 7
TAACCTACGAACAAAATTTTGGGGACGATCAATTCAGCTCGACCCTGTGGGAGTTTTGACCCTTGAGTTTGATGATGGTGAGGTTTTCAAATGGAGCAAGgtgtgtgctgctgctattgtgcttgtgcaagaaatat-tgcttgcttgtgtgttttcattttttggatacctgttttttgaggggaaaaaaaaaaaaaaaatctaaaatgtgtttatattgtccttag
|||| | || |||| ||||||||| | ||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||| | || | ||||||||||| | | || ||| ||| | | || | ||| | | || || | |||||| | |||||| |||| ||
TAACATTCGGTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGACCCAGTGGGAGTTCTGACCCTAGAGTTTGATGATGGTGAAATATTTCAGTGGAGCAAGgtataaatcgtgaaacgactgtttgcatggacaatgtatactgtccagtgcttgtgacttacttcctccgttttttttttacaagaaaaagaaaatcaat----------------------------
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G41940.1 (Glycine max), 5'ss of exon 6
TAACCTACGAACAAAATTTTGGGGACGATCAATTCAGCTCGACCCTGTGGGAGTTTTGACCCTTGAGTTTGATGATGGTGAGGTTTTCAAATGGAGCAAGgtgtgtgctgc-----tgctat-tgtgcttgtgcaagaaatattgcttgcttgtgtgtt---ttcattttttggatacctgttttttgaggggaaaaaaaaaaaaaaaatctaaaatgtgtttatattgtccttag
||| | | |||| ||||||||| | ||||||||||| ||||| ||||| ||| ||||||| |||||| ||||||||| | || | |||||||||||||| || |||| | | | | ||| | || | ||||| | ||| | | || | | | ||| || | ||| |||| | || ||||
CAACATCCATTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGACCCAGTGGGTGTTCTGACCCTAGAGTTTAGTGATGGTGAAATATTTCAGTGGAGCAAGgtgtgcattgtaaaatcactatctataaacattccgccaat-tcgcccggttgtgctagcgacttgcctttaataaaattgatcgtatatattctctctaaattaatgttataattgttgttgtttttactattag
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G03420.2 (Glycine max), 5'ss of exon 8
TAACCTACGAACAAAATTTTGGGGACGATCAATTCAGCTCGACCCTGTGGGAGTTTTGACCCTTGAGTTTGATGATGGTGAGGTTTTCAAATGGAGCAAGgtgtgtgctgctgctattgtgcttgtgcaagaaatattgcttgcttgtgtgttttcattttttggatacctgttttttgaggggaaaaaaaaaaaaaaaatctaaaatgtgtttatattgtccttag
||| | | |||| ||||||||| | ||||||||||| ||||| ||||| ||| ||||||| ||||| |||||| || | || | |||||||||||||| || | || || | | ||||| | | | | | | || || || || ||| | | | |
CAACATCCATTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGACCCAGTGGGTGTTCTGACCCTAGAGTTCAGTGATGGGGAAATATTTCAGTGGAGCAAGgtgtgcattg-taaaatcacact-----atctattattgatcgtatatattctctctaaaattaatgttatgattattgttgtttctactattag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110700214|gb|EE077994.1|EE077994EST: GAGTTTTGACCCTTGAGTTTGATGATGGTGAGGTTTTCAAATGGAGCAAG GTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCAC
genomic: GAGTTTTGACCCTTGAGTTTGATGATGGTGAGGTTTTCAAATGGAGCAAGgtgtgtgctg ... ttgtccttagGTCACGACCACCATTTATAATCTTATCCTTGGTAAAGTGTATTGTGATCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAACCTACGAACAAAATTTTGGGGACGATCAATTCAGCTCGACCCTGTGGGAGTTTTGACCCTTGAGTTTGATGATGGTGAGGTTTTCAAATGGAGCAAGgtgtgtgctgctgctattgtgcttgtgcaagaaatattgcttgcttgtgtgttttcattttttggatacctgttttttgaggggaaaaaaaaaaaaaaaatctaaaatgtgtttatattgtccttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG