Sequence
atgc intronic sequence ATGC exonic sequenceTCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgtagtgttctttagcattaaaatatttataggaaatattttgtgtattgataataaatatatgttggaatctactattctagttaagggtggtgtgcttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g55060.1 (Oryza sativa), 5'ss of exon 5
TCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgtagtgttctttagcattaaaatatttataggaaatattttgtgtattga-taataaatatatgttggaatctactattcta-gttaagggtggtgtgcttc
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TCTAGTAATTGGTGCCGATGCTCTTTCACAATTTGTGGATTGGACAGACAGAGGTACATGCATCCTCTTTGGTGATGCTGCTGGTGCTGTTTTGGTTCAGgtatttgttacttttgctgaaatatcgatatgctttccactatccaccaaattattactccgtactaagtatgagcgtcccatgcttaagttggttttca--
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G003190_T01 (Zea mays), 5'ss of exon 5
TCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgtagtgttc-tttagcattaaaatatttataggaaatattttgtgtattgataa-taaatatatgttggaatctactattctagttaagggtggtgtgcttc--
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CCTAGTAGTTGGTGCTGATGCTCTTTCAAAATATGTGGATTGGACAGACAGAGGTACATGCATCCTTTTTGGTGATGCTGCTGGTGCTGTGTTGGTACAGgtatagcttatcccctgtgtaaatatttatat----ttctccctatcccagtaagtcagtgttccatggctaaatctgattgaaatatggatggaacttgttca
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G022563_T01 (Zea mays), 5'ss of exon 5
TCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgtagtgttctttagcattaaaatatttataggaaatattttgtgtattgat-aataaatatatgttggaatctactattctagttaagggtggtgtgcttc
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CTTAGTAATTGGTGCAGATGCTCTTTCAAAATACGTGGATTGGACAGACAGAGGTACATGCATTCTTTTTGGTGATGCTGCTGGTGCTGTGTTGGTACAGgtatagctttccc-tgtgtaaatatttatatttctccccatcccagtaagttagttaatgttccatggctaaatctgattgaaatatggatggagcattgt
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G41380.1 (Glycine max), 5'ss of exon 5
TCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgtagtgttctttagcattaaaatatt-tataggaaatattttgtgtattgataataaatat--atgttggaatcta-ctattctagttaagggtggtgtgcttc
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TCTAGTTATTGGGGCGGATGCTCTTTCACGATATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAGgtaat--tgtatatcttccaggcattgttcaacattggtagcaaatgtcagttagcaatttggatcttgtttcttggctattacaattagttttgttg-gtta-
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G44350.1 (Glycine max), 5'ss of exon 5
TCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgtagtg------ttctttagcattaa--aatatttataggaaatattttgtgtattgataataaatatatgttggaatctactattctagttaagggtggtgtgcttc
|| || ||||| || |||||||| || || |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| || |||||| | | | ||||| ||| ||| ||| |||| | || || | | | || | ||||| | ||| || || |
-CTAGTTATTGGGGCGGATGCTCTCTCACGATATGTTGATTGGACAGACAGAGGGACCTGTATTCTTTTTGGGGATGCTGCTGGTGCTGTACTAGTACAGGtaattgtatatcttcctggcattgtccaatgtttgtagcaaatgtc--agctagcaatttggatcttgtttt----ttggctattacaattagttttgttggttat-
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G00550.1 (Glycine max), 5'ss of exon 4
TCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgtag--tgttctttagcattaaaatatttataggaaatattttgtgtattgataataaatatatgttggaatctactattctagttaagggtggtgtgcttc
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TCTAGTCATTGGAGCCGATGCTATTTCACGATATGTTGATTGGACAGATAGAGGCTCCTGTATTCTTTTTGGGGATGCTGCCGGTGCTGAACTAGTACAGgtaaattgtatatcttcctgcggccattcatagcaaattgtcaa---gttggcaaggtatataaatcgatgcctttgctcaggaactatgattacgttgcag
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G62640.2 (Arabidopsis thaliana), 5'ss of exon 6
TCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgtagtgttcttta----gcattaaaatatttataggaa---atattttgtgtattgataataaatatatgttggaatctacta--ttctagttaagggtggtgtgcttc-------------------------------------------------------------------------------------
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TTTAGTGATCGGAGCTGATTCTTTGTCTCGGTTTGTTGATTGGACGGATAGAGGGACTTGCATTCTATTTGGAGATGCTGCTGGTGCTGTGGTTGTTCAGgtactgtgccttatgaagcttttgagcaatttcgtgcacttatatccaaagtttgtatacataagcttcattgaaagagtataacctttagtaaattattacaagtaacacaatcataagacgagtgcttgccacagtgcatatcaaaagatcaatctttgtttattaacgaaatgtcctttcatttcgtgcag
upper sequence: Vv02s0154g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S119_22V6.2 (Physcomitrella patens), 5'ss of exon 7
TCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgt--agtgtt-ctttagcatta--aaatatttataggaaatattt---tgtgtattgataataaatatatgttggaatctactattctagttaagggtggtgtgcttc-------------------------------------------------------------------------------------------
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ACTTGTGGTGGGTGCGGATGCTCTATCGCGATACGTGGATTGGACTGACAGAGGGACATGTATTCTGTTTGGCGATGCCTCTGGAGCGCTTCTTTTACAGgtctgttgctacttaagttctaggaaaaacttgatgctactacttaaatgaccactaaaaacttttttgcctctcacccagtaacgccagtcaatcatcttcgggttgtcgaggttgtaggtgctacatcatcatgagccgcgtatgtgatatttcatttcaatcgtatcgctaatattttgcggtcctctttcaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110394481|gb|EC959504.1|EC959504EST: GAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAG GCCTGTGATAGTGAACAAGATGGTTTATTTGCTTTTGACTTGCATAGCGAT
genomic: GAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgtagtgttct ... cattctgcagGCCTGTGATAGTGAACAAGATGGTTTATTTGCTTTTGACTTGCATAGCGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTGTGATTGGAGCTGATGCTCTTTCTCGCTATGTTGATTGGACTGATAGAGGGACCTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTACTGGTTCAGgtagtgttctttagcattaaaatatttataggaaatattttgtgtattgataataaatatatgttggaatctactattctagttaagggtggtgtgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataataaa