Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattttagcctcacaacatttatagttgtttcattttcttttcccgtgattctttatttgcattgctttttctatttttaccacttcatttgcattggcttttctattggtactattgggaggattggttgtgacttgagttgcag

Basic information

species Vitis vinifera
transcript Vv02s0109g00360.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0109g00360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G00600.1 (Glycine max), 5'ss of exon 6
GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattttagcctcacaacatttatagttg--tttcattttcttttcccgtgattctttatttgcattgctttttctatttttaccacttcatttgcattggcttttctattggtactattgggaggattggttgtgacttgagttgcag
| | ||  ||||||||||||| |||||||||| |||||||||||  | || ||||| ||||||||||||||| | |  ||  | ||| |  ||||||  |||  |||    ||| |||  | ||  |  |  |  | || |  |||  |  | | |                                                                  
GCTGCTTCCATTCCTGTTGTTTTGGTCGAGAACAGTGGGAGATGCAACAAAAATGACAGTGATGAAAAGgttgg-agattgacttcatacaatttatttttgtcttttgaattcatttatcttgcatagtc-tgagaatggtatttcttgctgtcag-----------------------------------------------------------------

upper sequence: Vv02s0109g00360.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G30210.1 (Glycine max), 5'ss of exon 6
GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattttagcctcacaacatttatagttgtttcattttcttttcccgtgattctttatttgcattgctttttctatttttaccacttcatttgcattggcttttctattggtactattgggaggattggttgtgacttgagttgcag
| | ||   |||||||||||| |||||||||| |||||||||||  | || ||||| ||||||||||||||| | |  || ||   | |  ||||||  |||| |  |||  ||      |  | |||  | ||      | | | | ||  |   |                                                               
GCTGCTTCAATTCCTGTTGTTTTGGTCGAGAACAGTGGGAGATGCAACAAAAATGACAGTGATGAAAAGgttgg-agattggctaaatacaatttatttttgtctt-tttaattcatttatattgcttagtctgagaatgtgtgtttcttgctgttag--------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351032042|gb|FQ460299.1|FQ460299
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCCTGCCCAATGGAACTGCTCGGATCCCCAATT
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTC-TGCCAAATGGAACTGCTTGGATCCCCAATT
EST: gi|32247861|gb|CD713680.1|CD713680
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|351025046|gb|FQ433463.1|FQ433463
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAATCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|33405830|gb|CF211457.1|CF211457
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTCGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|351049167|gb|FQ449889.1|FQ449889
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGT
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGT
EST: gi|33401498|gb|CF207125.1|CF207125
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCGATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|352789810|gb|FQ478625.1|FQ478625
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAGAAG                         ATTCTGCCCAATGGAACTGCTTGGATCCCCA-TTTAGTCAAAAC
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAAC
EST: gi|349822372|gb|FQ412636.1|FQ412636
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTCGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|351030119|gb|FQ430861.1|FQ430861
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|352798838|gb|FQ478473.1|FQ478473
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|351045998|gb|FQ441381.1|FQ441381
EST:     TTCTGGTCGAGAATAGTGCGAGATGTCATAAGAATGACAGTGATGAAAAG                         ATTCTGTCAAATGGGACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|351027316|gb|FQ444565.1|FQ444565
EST:     TTCTGGTCGAGAATAGTGNGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|352798554|gb|FQ480579.1|FQ480579
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|32247300|gb|CD713119.1|CD713119
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|32459230|gb|CD800404.1|CD800404
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAATG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|110418134|gb|EC984253.1|EC984253
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|351032119|gb|FQ460376.1|FQ460376
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCCAATGGAACTGCTTGGACCCCCA-TTTAATCAAAA-AATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|34321097|gb|CF373851.1|CF373851
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|352786750|gb|FQ481125.1|FQ481125
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCCATTAAGTCAAAACA-TCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|351012367|gb|FQ430052.1|FQ430052
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAANAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|351052014|gb|FQ455307.1|FQ455307
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAGAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAA-CAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|32270337|gb|CD719496.1|CD719496
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|110426088|gb|EC992485.1|EC992485
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|110694471|gb|EE071604.1|EE071604
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCGATTTAGTCAAA-CAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|351035432|gb|FQ459699.1|FQ459699
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAGAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|33405748|gb|CF211375.1|CF211375
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTCGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|351038581|gb|FQ464447.1|FQ464447
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCCATTTAGTCAAAAACA-TCAC
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAA-CAATCAC
EST: gi|351015670|gb|FQ427155.1|FQ427155
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
EST: gi|32268282|gb|CD717441.1|CD717441
EST:     TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAG                         ATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA
genomic: TTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattt ... tgagttgcagATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGgtttgtattttagcctcacaacatttatagttgtttcattttcttttcccgtgattctttatttgcattgctttttctatttttaccacttcatttgcattggcttttctattggtactattgggaggattggttgtgacttgagttgcag

- - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - GAGATG