1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGATTGGCAAATTTGCTTGGTTGTTGTTCTGAAGGAGATGAGAGGTTACTTGTCGCAGAATTTATGCCCAATGACACACTTGCAAAGCACCTGTTTCATTgtaagtttcttagacatgcaacatctggtgaccttgcatatgctttagcatttgtgcaacatttattttatttaagaaatctatatttgggatactcaat...
species | Vitis vinifera |
transcript | Vv02s0025g03550.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACACTTGCAAAGCACCTGTTTCATT GGGAAACACAACCTATGAAATGGGCTATGCGATTAAGGGTGGCTTTATATCEST: gi|349812229|gb|FQ411824.1|FQ411824
genomic: CACACTTGCAAAGCACCTGTTTCATTgtaagtttct ... gttggctcagGGGAAACACAACCTATGAAATGGGCTATGCGATTAAGGGTGGCTTTATATC
EST: CACACTTGCAAAGCACCTGTTTCATT GGGAAACACAACCTATGGAATGGGCTATGCGATTAAGGGTGGCTTTATATCEST: gi|349818651|gb|FQ403286.1|FQ403286
genomic: CACACTTGCAAAGCACCTGTTTCATTgtaagtttct ... gttggctcagGGGAAACACAACCTATGAAATGGGCTATGCGATTAAGGGTGGCTTTATATC
EST: CACACTTGCAAAGCACCTGTTTCATT GGGAAACACAACCTATGAAATGGGCTATGCGATTAAGGGTGGCTTTATATCEST: gi|351042322|gb|FQ442789.1|FQ442789
genomic: CACACTTGCAAAGCACCTGTTTCATTgtaagtttct ... gttggctcagGGGAAACACAACCTATGAAATGGGCTATGCGATTAAGGGTGGCTTTATATC
EST: CACACTTGCAAAGCACCTGTTTCATT GGGAAACACAACCTATGAAATGGGCTATGCGATTAAGGGTGGCTTTATATC
genomic: CACACTTGCAAAGCACCTGTTTCATTgtaagtttct ... gttggctcagGGGAAACACAACCTATGAAATGGGCTATGCGATTAAGGGTGGCTTTATATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTGGCAAATTTGCTTGGTTGTTGTTCTGAAGGAGATGAGAGGTTACTTGTCGCAGAATTTATGCCCAATGACACACTTGCAAAGCACCTGTTTCATTgtaagtttcttagacatgcaacatctggtgaccttgcatatgctttagcatttgtgcaacatttattttatttaagaaatctatatttgggatactcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggatac