Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTAAACATAGAGCAGATCAGACCAGTCCAGTATCTGTCCTGGAGCCATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagattttgtgtctggaatttataattagtcgttttgttgtctttcgatctgaaattgaattatcccacttgaacatctacag

Basic information

species Vitis vinifera
transcript Vv02s0025g03420.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349821698|gb|FQ413014.1|FQ413014
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351043111|gb|FQ451284.1|FQ451284
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|30298934|gb|CB975728.1|CB975728
EST:     ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|349812996|gb|FQ411236.1|FQ411236
EST:     TTTCCCATGGAAGATGTCACT-GCCCCCTCA-GCATCATTTCTAAACATG                         ATGACCTGCCA
genomic: TTTCCCATGGAAGATGTCACTAGCCCC-TCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCA
EST: gi|351051854|gb|FQ455268.1|FQ455268
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGTTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|349827307|gb|FQ421580.1|FQ421580
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351025649|gb|FQ426663.1|FQ426663
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351057015|gb|FQ448532.1|FQ448532
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351033268|gb|FQ462040.1|FQ462040
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAGGCATCATTTCTGAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351055512|gb|FQ442308.1|FQ442308
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351027423|gb|FQ444672.1|FQ444672
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351034126|gb|FQ463060.1|FQ463060
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351013982|gb|FQ434134.1|FQ434134
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351032387|gb|FQ461640.1|FQ461640
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGTTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351039821|gb|FQ464859.1|FQ464859
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351047995|gb|FQ441167.1|FQ441167
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351023952|gb|FQ423375.1|FQ423375
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|349807359|gb|FQ401351.1|FQ401351
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|352798974|gb|FQ480823.1|FQ480823
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|349813871|gb|FQ414105.1|FQ414105
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|351037038|gb|FQ465030.1|FQ465030
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: gi|349812998|gb|FQ411238.1|FQ411238
EST:     ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG                         ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAATTAAACATAGAGCAGATCAGACCAGTCCAGTATCTGTCCTGGAGCCATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagattttgtgtctggaatttataattagtcgttttgttgtctttcgatctgaaattgaattatcccacttgaacatctacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG