1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAATTAAACATAGAGCAGATCAGACCAGTCCAGTATCTGTCCTGGAGCCATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagattttgtgtctggaatttataattagtcgttttgttgtctttcgatctgaaattgaattatcccacttgaacatctacag
species | Vitis vinifera |
transcript | Vv02s0025g03420.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351043111|gb|FQ451284.1|FQ451284
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|30298934|gb|CB975728.1|CB975728
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATG ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|349812996|gb|FQ411236.1|FQ411236
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: TTTCCCATGGAAGATGTCACT-GCCCCCTCA-GCATCATTTCTAAACATG ATGACCTGCCAEST: gi|351051854|gb|FQ455268.1|FQ455268
genomic: TTTCCCATGGAAGATGTCACTAGCCCC-TCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCA
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGTTTEST: gi|349827307|gb|FQ421580.1|FQ421580
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351025649|gb|FQ426663.1|FQ426663
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351057015|gb|FQ448532.1|FQ448532
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351033268|gb|FQ462040.1|FQ462040
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAGGCATCATTTCTGAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351055512|gb|FQ442308.1|FQ442308
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351027423|gb|FQ444672.1|FQ444672
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351034126|gb|FQ463060.1|FQ463060
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351013982|gb|FQ434134.1|FQ434134
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351032387|gb|FQ461640.1|FQ461640
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGTTTEST: gi|351039821|gb|FQ464859.1|FQ464859
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351047995|gb|FQ441167.1|FQ441167
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351023952|gb|FQ423375.1|FQ423375
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|349807359|gb|FQ401351.1|FQ401351
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|352798974|gb|FQ480823.1|FQ480823
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|349813871|gb|FQ414105.1|FQ414105
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|351037038|gb|FQ465030.1|FQ465030
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTACCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTTEST: gi|349812998|gb|FQ411238.1|FQ411238
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
EST: ATTTCCCATGGAAGATGTCACT-GCCCCTCAAGCATCATTTCTAAACATG ATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
genomic: ATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagatttt ... acatctacagATGACCTGCCAATGCAACTAGAAATTACTTTTGATAAACATTGTTCTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATTAAACATAGAGCAGATCAGACCAGTCCAGTATCTGTCCTGGAGCCATTTCCCATGGAAGATGTCACTAGCCCCTCAAGCATCATTTCTAAACATGgtaagattttgtgtctggaatttataattagtcgttttgttgtctttcgatctgaaattgaattatcccacttgaacatctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG