Sequence
atgc intronic sequence ATGC exonic sequenceTTTCCTATGGCTGATGGCAGTTGGTACTATCTTGTGTGCATCTTATTGGTCTGCATGGAGTGCCAGAGAGGCAGCTATTGAACAGGACAAGCTACTAAAGgtcatctgttgccaatcctagctaattaggttttctccagtaatttttttctctcttagggtagggtctcatgtgctgcagcttatgaatggtccctgatatatgaagtaaacttgttcttatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g57710.1 (Oryza sativa), 5'ss of exon 5
TTTCCTATGGCTGATGGCAGTTGGTACTATCTTGTGTGCATCTTATTGGTCTGCATGGAGTGCCAGAGAGGCAGCTATTGAACAGGACAAGCTACTAAAGgtcatctgttgccaatcctagctaattaggttttctccagtaatttttttctctcttagggtagggtctcatgtgctgcagcttatgaatggtccctgatatatgaagtaaacttgttcttatag
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GTTTTTGTGGCTTATGGCTGTTGGTACCATTCTTTGTGCATCATACTGGTCAGCATGGAGTGCTCGAGAAGCAGTTATTGAACAAGAGAAGCTTCTAAAGgt--tctgaacagaagcttatttgacta---ttgttctgg--attttgtttgcttgaaaagagaactaaca-gtcatttggtttatgtag-----------------------------------
upper sequence: Vv02s0025g03400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os06g51430.1 (Oryza sativa), 5'ss of exon 5
TTTCCTATGGCTGATGGCAGTTGGTACTATCTTGTGTGCATCTTATTGGTCTGCATGGAGTGCCAGAGAGGCAGCTATTGAACAGGACAAGCTACTAAAGgtcatctgttgccaatcctagctaattaggttttctccagtaatttttttctctcttagggtagggtctcatgtgctgcagcttatgaatggtccctgatatatgaagtaaacttgttcttatag
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ATTCCTTTGGCTTATGGCTGTTGGTACTGTCCTTTGTGCATCATACTGGTCCGCATGGAGTGCTAGAGAAGCACTTTGTGAACAAGAGAAGCTCCTCAAGgttctgatccgttaatgccatgacacttagctttcacc------tattctacctgtaatggaggactgacaaatgcactaa-ttgtaaag-----------------------------------
upper sequence: Vv02s0025g03400.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G096343_T01 (Zea mays), 5'ss of exon 5
TTTCCTATGGCTGATGGCAGTTGGTACTATCTTGTGTGCATCTTATTGGTCTGCATGGAGTGCCAGAGAGGCAGCTATTGAACAGGACAAGCTACTAAAGgtcatctgttgccaatcctagctaattaggttttctccagtaatttttttctctcttagggtagggtctcatgtgctgca-gcttatgaatggtccctgatatatgaagtaaacttgttcttatag
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GTTTCTGTGGCTTATGGCAGTTGGTACCATTCTTTGTGCATCATACTGGTCAGCATGGAGTGCCCGAGAAGCAGATATTGAACAAGAGAAGCTTCTGAAGgttctaaaccccaaatcttg-----tttgatttctattgctagttttgcgtacttgaaaaaaagggactgacaggttcaatacttgttag------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110685071|gb|EE063074.1|EE063074EST: CTGCATGGAGTGCCAGAGAGGCAGCTATTGAACAGGACAAGCTACTAAAG GATGCTTCAGATGAGCTTACAAATGGCAAAGATGGTGGTGCTAGTGGTGTG
genomic: CTGCATGGAGTGCCAGAGAGGCAGCTATTGAACAGGACAAGCTACTAAAGgtcatctgtt ... gttcttatagGATGCTTCAGATGAGCTTACAAATGCCAAAGATGGTGGTGCTAGTGGTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCCTATGGCTGATGGCAGTTGGTACTATCTTGTGTGCATCTTATTGGTCTGCATGGAGTGCCAGAGAGGCAGCTATTGAACAGGACAAGCTACTAAAGgtcatctgttgccaatcctagctaattaggttttctccagtaatttttttctctcttagggtagggtctcatgtgctgcagcttatgaatggtccctgatatatgaagtaaacttgttcttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT