1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATATAACAGTGTATACGCTTATGGACAATCAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctatatatttatcttcatcaattaatcatccaaaatattggcatttcaatagtcgtgcctaaccctaaaatatccttgtcaagatcctttttatg...
species | Vitis vinifera |
transcript | Vv02s0025g03380.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAG GAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCEST: gi|110369965|gb|EC934139.1|EC934139
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAG GAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCEST: gi|34543255|gb|CF511487.1|CF511487
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAGAGCGCCTGCAG GAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCEST: gi|110394584|gb|EC959749.1|EC959749
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAG GAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCEST: gi|71868300|gb|DT017355.1|DT017355
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAG GAAGAAAAGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCEST: gi|110361021|gb|EC924471.1|EC924471
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAG GAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCEST: gi|22007077|gb|BQ792111.1|BQ792111
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCATGCAAAGCGCCTGCAG GAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCEST: gi|110417605|gb|EC983675.1|EC983675
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAG GAAGAAGGCGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCEST: gi|34543342|gb|CF511574.1|CF511574
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAGAGCGCCTGCAG GAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCEST: gi|110712661|gb|EE087900.1|EE087900
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAN GAAGAAGGCGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCEST: gi|34415314|gb|CF414068.1|CF414068
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
EST: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAG GAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
genomic: CAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctata ... tattaaatagGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATAACAGTGTATACGCTTATGGACAATCAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGgtactctatatatttatcttcatcaattaatcatccaaaatattggcatttcaatagtcgtgcctaaccctaaaatatccttgtcaagatcctttttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaata