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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTCTCTTTCAACACCATTTCAACCTGCTCAACCTGCTCAGACAATTGGTGCTTTTGGCTTTAGCAACTTCGGTCAGACACAAGCAGgtaattcaatttattttatttagttatttcatttcttgctgacatagaccttgaacatttggcctttttattttgtggtgttgacttcttttttctttcttattttggttccttcatag

Basic information

species Vitis vinifera
transcript Vv02s0025g03150.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03150.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G33910.2 (Glycine max), 5'ss of exon 6
CCCTCTCTTTCAACACCATTTCAACCTGCTCAACCTGCTCAGACAATTGGTGCTTTTGGCTTTAGCAACTTCGGTCAGACACAAGCAGgt-aattcaatttattttatt-tagttatttcatttcttgctgacatagaccttgaacatttggcctttttattttgtggtgttgacttcttttttctttcttattttggttccttcatag
|| ||  |||||||||| ||||||||||| |||||||||||| | | |||||||||||||||||||||||| |||||||||||| | ||| | |||||| |||| |||  |  || |   |||| ||  ||    |  |  ||       |   ||  | |||||   ||     ||  || | |  |||||  | |            
CCATCCATTTCAACACCTTTTCAACCTGCACAACCTGCTCAGTCGAGTGGTGCTTTTGGCTTTAGCAACTTTGGTCAGACACAACCTGgtcagttcaatatattatataatgcttgtactatttgtt-ttgtttcatgcaatggttgaagga--ttaatgttttg-aatgactgttttattatacggtcttaaatag------------

upper sequence: Vv02s0025g03150.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G36350.1 (Glycine max), 5'ss of exon 6
CCCTCTCTTTCAACACCATTTCAACCTGCTCAACCTGCTCAGACAATTGGTGCTTTTGGCTTTAGCAACTTCGGTCAGACACAAGCAGgt-aattcaatttattttatt-tagttatttcatttcttgctgacatagaccttgaacatttggcctttttattttgtggtgttgacttcttttttctttcttattttggttccttcatag
|  ||  |||||||||| |||||| |||| |||||||||||| | | |||||||||||||||| ||||||| || ||||||||| | ||| | |||||| |||| |||  |  ||||   |||| ||  ||    |  |  |||      |   ||  |||||||   ||   | ||  || |    |||||  | |            
CTGTCCATTTCAACACCTTTTCAATCTGCACAACCTGCTCAGTCGAGTGGTGCTTTTGGCTTTGGCAACTTTGGCCAGACACAACCTGgtcagttcaatatattatataatgcttatactatttgtt-ttgtttcatgcaatgattgaagga--ttaatattttg-aatgactattttattgtatggtcttaaatag------------