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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGACTGCCGTGTATGCGGTGACCCTAACTCAGTTCTGCGTTTTGCTTTTGTTGAGTTTACTGATGAAGgtaagtaattaacttacctaaattctatatggtgcataattcacaggtttttggttgtttatttgactctgggtattttggttatgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g02740.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S62_224V6.1 (Physcomitrella patens), 5'ss of exon 4
GTTGTTGACTGCCGTGTATGCGGTGACCCTAACTCAGTTCTGCGTTTTGCTTTTGTTGAGTTTACTGATGAAGgtaagta-attaacttacctaaattctatatggtgcataattcacaggtttttggttgtttatttgactctgggtattttg--gttatgcag----------
||||| || ||||||||||| |||||||| ||||| || || || ||||||||||| || || ||||| ||||||||  | ||   |  | |  | || ||| |  |   || || |     |||| || | ||    |  |||| |   | |    | ||   |          
GTTGTGGATTGCCGTGTATGTGGTGACCCAAACTCTGTGCTCCGATTTGCTTTTGTGGAATTCACTGACGAAGgtaaacacatctgcgcatccgacttttattttattt-tattttattttatttttgt-gcttgacagtttctgagagctgtataatcataaggttattagcct

upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ23027 (Selaginella moellendorffii), 5'ss of exon 4
GTTGTTGACTGCCGTGTATGCGGTGACCCTAACTCAGTTCTGCGTTTTGCTTTTGTTGAGTTTACTGATGAAGgtaagtaattaacttacctaaattctatatggtgcataattcacaggtttttggttgtttatttgactctgggtattttggttatgcag
||| ||||||||||||| |||||||| || || || |||||| | ||||| ||||| || || || ||||||||||||  |     || |     || |  ||  | |     | ||| |||  || ||| | |     |  ||   |              
GTTATTGACTGCCGTGTTTGCGGTGATCCCAATTCGGTTCTGAGATTTGCCTTTGTGGAATTCACAGATGAAGgtaag--accgg-ttgctcctgttgtccatttttc-----ttacatgttgatg-ttgatgacacaccattgatcag-------------

upper sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ30509 (Selaginella moellendorffii), 5'ss of exon 4
GTTGTTGACTGCCGTGTATGCGGTGACCCTAACTCAGTTCTGCGTTTTGCTTTTGTTGAGTTTACTGATGAAGgtaagtaattaacttacctaaattctatatggtgcataattcacaggtttttggttgtttatttgactctgggtattttggttatgcag
||| ||||||||||||| |||||||| || || || |||||| | ||||| ||||| || || || ||||||||||||  ||    || |     || |  ||  | |     | ||| |||  || ||| | |     |  ||   |              
GTTATTGACTGCCGTGTTTGCGGTGATCCCAATTCGGTTCTGAGATTTGCCTTTGTGGAATTCACAGATGAAGgtaag--atcgg-ttgctcctgttgtccatttttc-----ttacatgttgatg-ttgatgacacaccattgatcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34416313|gb|CF415067.1|CF415067
EST:     TGACCCTAACTCAGTTCTGCGTTTTGCTTTTGTTGAGTTTACTGATGAAG                         AAGGTGCACGGGCTGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACC
genomic: TGACCCTAACTCAGTTCTGCGTTTTGCTTTTGTTGAGTTTACTGATGAAGgtaagtaatt ... ggttatgcagAAGGTGCACGGGCTGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACC