1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGGTGCAGTGAAAAGGCATACGACTATCTTTCAATCAATGATGCCCGACATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAGgtaaatattgttttgctacaacaatatctttaaattactagatgtctaattatcctttttcctgcaaaagcggctttaaatacattatttgcattttttt...
species | Vitis vinifera |
transcript | Vv02s0025g02010.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAG GAGCATCCTGAGTGGGAGATAAAGAATGGCCACGTGTTTTTCCAGAGGGCGEST: gi|110718356|gb|EE095093.1|EE095093
genomic: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAGgtaaatattg ... ctgcttgcagGAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAGGGCG
EST: TATGTTGCTGTTCTCTTCTGACAAAGAACTTTTTTGA-TATATCAAGGAG GAGCATCCTGAGTGGGAGATAAAGAATG-CCACGTGTTTTTCCAGAGEST: gi|110731735|gb|EE106407.1|EE106407
genomic: TATGTTGCTGTTCTCTTCTGACCAAGAACTTTTT-GAATATATCAAGGAGgtaaatattg ... ctgcttgcagGAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAG
EST: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAG GAGCATCCTGAGTGGGAGATAAAGAATGGCCACGTGTTTTTCCAGAGGGCGEST: gi|110707571|gb|EE084124.1|EE084124
genomic: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAGgtaaatattg ... ctgcttgcagGAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAGGGCG
EST: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAGGGAG GAGCATCCTGAGTGGGAGATAAAGAAGGGGCACGTGTTTTTCC-GAGGGCGEST: gi|110374493|gb|EC939283.1|EC939283
genomic: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAGgtaaatattg ... ctgcttgcagGAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAGGGCG
EST: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAG GAGCATCCTGAGTGGGAGATAAAGAATGGCCACGTGTTTTTCCAGAGGGCGEST: gi|351044575|gb|FQ443106.1|FQ443106
genomic: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAGgtaaatattg ... ctgcttgcagGAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAGGGCG
EST: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAG GAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAGGGCGEST: gi|351033177|gb|FQ461949.1|FQ461949
genomic: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAGgtaaatattg ... ctgcttgcagGAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAGGGCG
EST: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAG GAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAGGGCGEST: gi|110410923|gb|EC976617.1|EC976617
genomic: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAGgtaaatattg ... ctgcttgcagGAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAGGGCG
EST: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAG GAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAGGGCG
genomic: ATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAGgtaaatattg ... ctgcttgcagGAGCATCCTGAGTGGGAGATAAAGAACGGCCATGTGTTTTTCCAGAGGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTGCAGTGAAAAGGCATACGACTATCTTTCAATCAATGATGCCCGACATATGTTGCTGTTCTCTTCTGACCAAGAACTTTTTGAATATATCAAGGAGgtaaatattgttttgctacaacaatatctttaaattactagatgtctaattatcctttttcctgcaaaagcggctttaaatacattatttgcattttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataca