Sequence
atgc intronic sequence ATGC exonic sequenceGCGTGCAATGCTCATGGGCTCTATTGCGTTCCTTTATATGATACCCTAGgtatgcatcatcccttccttgacatgattctacataagcatgcaatactttttaccataccatgaatctatgtataggctgtatttgataaaactgaaag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G43470.5 (Glycine max), 5'ss of exon 5
GCGTGCAATGCTCATGGGCTCTATTGCGTTCCTTTATATGATACCCTAGgtatgcatcatcccttccttgacatgattctacataagcatgcaatactttttaccataccatgaatctatgt-ataggctgtatttgataaaactgaaag---
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GCTTGCAATGCTCATGGACTTTATTGTGTTCCTTTATATGATACCTTGGgtatgt-tcacagcttcattaaaatgtttctaca---acatgaattgcagtcaaccttgctttccatatctgttgtgcacaagagttgctactatcaagggaca
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G02030.1 (Glycine max), 5'ss of exon 5
GCGTGCAATGCTCATGGGCTCTATTGCGTTCCTTTATATGATACCCTAGgtatgcatcatcccttccttgacatgattctacataagcatg-caatactttttaccat-accatgaatctatgtataggctgtatttgataaaactgaaag-
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GCTTGCAATGCTCATGGACTTTATTGTGTTCCTTTATATGATACCTTGGgtatgt-tcacagcttcattaaaatgtttctacaccatggtgacagttatatactcaattgcaatcaaaacttgcttt--ccacatctgttgtacacaagagt
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G23850.1 (Arabidopsis thaliana), 5'ss of exon 5
GCGTGCAATGCTCATGGGCTCTATTGCGTTCCTTTATATGATACCCTAGgtatgcatcatcccttccttgacatgattctacataagcatgcaatactttttaccatacca-tgaatctatgtataggctgtatttgataaaactgaaag------------------------
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GCTTGTAATGCACATGGACTCTATTGTGTACCGTTATATGATACACTAGgtatgccttttttagtatttcccaatatactctagaaggataaattcgccaatagatttccagtgagcttctacaaatcttttagctagcttatttgtcatttttgttgcgtgtcaattttatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352781555|gb|FQ468399.1|FQ468399EST: GCGTGCAATGCTCATGGGCTCTATTGCGTTCCTTTATATGATACCCTAG GTGCCGGTGCCGTGGAATTTATCATATGCCATTCAGAGCTGTCAATTGTTT
genomic: GCGTGCAATGCTCATGGGCTCTATTGCGTTCCTTTATATGATACCCTAGgtatgcatca ... ttatggttagGTGCCGGTGCCGTGGAATTTATCATATGCCATTCAGAGCTGTCAATTGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGTGCAATGCTCATGGGCTCTATTGCGTTCCTTTATATGATACCCTAGgtatgcatcatcccttccttgacatgattctacataagcatgcaatactttttaccataccatgaatctatgtataggctgtatttgataaaactgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa