Sequence
atgc intronic sequence ATGC exonic sequenceCCTTGCCGGAGAGACCGCCGCCGCCATGGCCGCCGCCTCTATTGTCTTCCGCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAGgttcatctctccctctctctctctctctctctctcaaacacatagtctgtttggcgcatgttagcacagtctaccgtgcgccgagcagttgagcggtcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g12150.1 (Oryza sativa), 5'ss of exon 2
CCTTGCCGGAGAGACCGCCGCCGCCATGGCCGCCGCCTCTATTGTCTTCCGCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAGgttcatctctccctctctctctct-ctctctctctcaaacacatagtctgtttggcgcatgttagcacagtctaccgtgcgccgagcagttgagcggtcct
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CCTCGCCGCCGAGACCGCCGCCGCCATGGCCGCCGCGTCCATCGTCTTCCGCGGCACGTACCCTGGCTACGCCAACCTCCTCCTTGTGCACTCCAAGCAGgtcggtcatccaaacactccaagaactctcgcaaatgagctcgaaatcaaacgaaatttcctctgaaaattttgtggcgcgttcag---------------
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G143747_T01 (Zea mays), 5'ss of exon 2
CCTTGCCGGAGAGACCGCCGCCGCCATGGCCGCCGCCTCTATTGTCTTCCGCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAGgttcatctctccctctctctctctctctctctctcaaacacatagtctgtttggcgcatgttagcacagtctaccgtgcgccgagcagttgagcggtcct---------
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CCTTGCCGGAGAGACCGCCGCGGCCATGGCCGCCGCGTCCCTCGTGTTCCGCAGCACGTATCCGGGCTACGCCAACCTGCTCCTTCAGCATGCCAAGGAGgtac-tgtaattgtattaatttgtacgtacgtattag-cacagtttctcccaaatgc---ccagaacattagacctcagattttgtaattatgttttcgtcgtcttcag
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 3
CCTTGCCGGAGAGACCGCCGCCGCCATGGCCGCCGCCTCTATTGTCTTCCGCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAGgtt---catctctccctctctctctctctctctctctcaaacacatagtctgtttggcgcatgttagcacagtctaccgtgcgccgagcagttgagcg--gtcct
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TCTTGCCGGAGAAACCGCCGCCGCTATGGCCGCTGCCTCCATTGTTTTCCGACGCTCTAACCCTGCCTATGCCGCCGAACTCCTCCGCCATGCCTACCAGgtagtacacactactagcttttacgctttcgtatggtatataatttaattagatgtgcgcattgtagtgtag---aaagtg-gacaaacagtgaagcgtggtgc-
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 3
CCTTGCCGGAGAGACCGCCGCCGCCATGGCCGCCGCCTCTATTGTCTTCCGCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAGgttcat--ctctccctctctctctctctctctctctcaaacacatagtctgt-ttggcgca---tgttagcacagtctaccgtgcgccgagcagttgagcggtcct
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TCTTGCCGGAGAAACAGCAGCCGCCATGGCCGCCGCATCAATTGTTTTCCGCCGATCTAACCCTGTTTACTCTAGGCTACTACTCACTCACGCCTATCAGgtaaaaaactttttatttccggcgcctttttactactattgaggaagcttacgttagcataaagtgtgggtatatttaat--tactacaggcagttacgttt----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717038|gb|FC065898.1|FC065898EST: GCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAG CTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACA
genomic: GCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAGgttcatctct ... ttattttcagCTGTTCGAGTTTGGAGACAAATACAGGGGCAAATATGACAGCAGCATCACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTTGCCGGAGAGACCGCCGCCGCCATGGCCGCCGCCTCTATTGTCTTCCGCCGTTCCAACCCTTCCTACGCCAATGAGCTTCTGACCCATGCTCGACAGgttcatctctccctctctctctctctctctctctcaaacacatagtctgtttggcgcatgttagcacagtctaccgtgcgccgagcagttgagcggtcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaca