1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCTGCATCTGTCTCTTGGAATCCACAAAGAGGTGAAAGTCAGCAATCAAGCTTTGTCTTGGGTTTTCATTCTGACACTCCGCAACTCAATTCCGCAAAGgtctgttaaattctgcatttcttgcttccttgtcattaaatttctatgtgagattgtagactagctacatgtctagggcacagcctttcctacctcatca...
species | Vitis vinifera |
transcript | Vv02s0025g01250.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTTTGTCTTGGGTTTTCATTCTGACACTCCGCAACTCAATTCCGCAAAG GTCTGGGAATTTGATCAGAATCACCAAAGATGGCTTCCAGTTGCTGAGTTGEST: gi|71873900|gb|DT022955.1|DT022955
genomic: GCTTTGTCTTGGGTTTTCATTCTGACACTCCGCAACTCAATTCCGCAAAGgtctgttaaa ... atttccacagGTCTGGGAATTTGATCAGAATCACCAAAGATGGCTTCCAGTTGCTGAGTTG
EST: GCTTTGTCTTGGGTTTTCATTCTGACACTCCGCAACTCAATTCCGCAAAG GTCTGG-AANTTTGATCAGAATCACCAAAGATGGCTTCCAGTTGCTGAGEST: gi|77578329|gb|DV217952.1|DV217952
genomic: GCTTTGTCTTGGGTTTTCATTCTGACACTCCGCAACTCAATTCCGCAAAGgtctgttaaa ... atttccacagGTCTGGGAA-TTTGATCAGAATCACCAAAGATGGCTTCCAGTTGCTGAG
EST: GCTTTGTCTTGGGTTTTCATTCTGACACTCCGCAACTCAATTCCGCAAAG GTCTGGGAATTTGATCAGAATCACCAAAGATGGCTTCCAGTTGCTGAGTTG
genomic: GCTTTGTCTTGGGTTTTCATTCTGACACTCCGCAACTCAATTCCGCAAAGgtctgttaaa ... atttccacagGTCTGGGAATTTGATCAGAATCACCAAAGATGGCTTCCAGTTGCTGAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGCATCTGTCTCTTGGAATCCACAAAGAGGTGAAAGTCAGCAATCAAGCTTTGTCTTGGGTTTTCATTCTGACACTCCGCAACTCAATTCCGCAAAGgtctgttaaattctgcatttcttgcttccttgtcattaaatttctatgtgagattgtagactagctacatgtctagggcacagcctttcctacctcatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttcc