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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctcttcaaagttcatattttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc...

Basic information

species Vitis vinifera
transcript Vv02s0025g01000.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 5
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctcttcaaa-gttcatattttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc
|||||||||||| ||| |||||||||||||||| || ||||| ||||||||||| |||||||| ||  |||| ||||| ||||| || ||| | || |||||   | |  ||     | |  || | ||  |     |       ||   |     |||  ||   |  |           | |  ||    ||||     
CTCTGGAGGTGTTGTGCTGGCTTCTCGAGATGGAAAGATTGTGTGTGAGAACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgtttagctcgattttaatattcattttgttccaccaattccaaagtttcaaccatgtatacaagtagttcagtaccactagaacatttaaac-

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G030167_T01 (Zea mays), 5'ss of exon 5
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgta--tttgctcttcaaagttc----atattttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc
|||||||||| | || ||||||||||||||||| || ||||| | |||||  || ||||| |||||| | || ||||| ||||| || ||| | |||||||||  ||||  | ||  | ||     ||||    | || ||   |    | || |     |  || ||  ||| |   | | |||  | |||     |    |   
CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttggccatctcattttctcaatataccatgtcgcaccaaac--gcttttgagttcacatcat--gtccagctgcctttttttttttgaaagaaaaacc--

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 5
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctcttcaaagttcatattttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc-------------------------------------------------------------------------------------------------------------
|||||||||| | || ||||||||||||||||| || ||||| | |||||  || ||||| || ||| |||| ||||| ||||| || ||| | |||||||||  |          |  ||| |  ||||| | |  ||| ||   |||  |  ||  ||| |||| || | | |||||  |   | |   |   |  |                                                                                                              
CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtaccttt--------ggccatctcattttttcaatatacctg---tatgaaaaccttttagcagt-aacttgtcatttagttactgtaaaacaggtagagtttttttttataggagaaaaccattcttctgttttatgagcaattaattattagtttatcacgaaatcttcatagaaccaagttaacacaacgctcctacccttgcag

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G37160.1 (Glycine max), 5'ss of exon 5
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctctt--caaagttcatattttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc
|||||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||||||| || | ||||| || ||||||||||| ||||||||||||  |  | |   || ||    | |||| ||       |   |  ||| | |     | ||  |  | ||||     | | |  || || || ||| |   
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcatagcaattgttttattctgtgactctatcctttttgttaaatatttgccgctgaatttttactgtgactttcatattgtttcca--

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G02420.1 (Glycine max), 5'ss of exon 5
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctctt--caaagttcatattttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc
|||||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||||||| || | ||||| || ||||||||||| ||||||||||||  |  | |   || |     | |||| ||     | |   |  ||| | |     | ||  |  |  ||||  |   | |  || || || ||| |   
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcataacaactgttttattgtgtggctctatcctttttgttagatatttgccgctgtattg--ctactgactttcatattgtttccaag

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G02390.1 (Glycine max), 5'ss of exon 5
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctcttcaaagttcata-ttttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc
|||||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||||||| |  | ||||| || ||||||||||| ||||||||||||           |   |   | || || |||   | |  | | | | | |  |  |||| |   |    | ||| | || | ||  | | | |      
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaagaactgagtatagcagttcttattctgtgatgttagatatttgttgctgaattgtttttactgttgac-tctcgtattgctctcactcaaata

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G37150.1 (Glycine max), 5'ss of exon 5
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgta--tttgctcttcaaagttcatattttttttcccagttacttggtttatatacc--ccaattatcagtcaattggacatttcatctttatgttatttgctgc
|||||| || ||||||||||||||||| ||||| || ||||| || || || || ||||||||| || | ||||| || ||||||||||| ||||||||||||  |||  | |||| ||    | | || ||       |  |     ||| | |   |||||| |  ||  ||||    |||||| ||| |   |  |     
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGCGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaagttttttgttcatagcagttgtcttattctgtgacttgtatccatatttgctgtccaattgtttgt--attgtgactttcatattttttccaagtaaa--

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G37190.1 (Glycine max), 5'ss of exon 5
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctcttcaaagttcatattttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc-
||| || || ||||||||||||||||| ||||| || ||||| ||||| || || ||||||||| |  | ||||| || ||||||||||| ||||||||||||              |     || || |||   |||  | | | | | |  |  |||| |   |    | ||  |||||| ||  | | | |       
CTCCGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaaaaattgcatagcagttcttattcagtgttgttagatatttgttgctgaattctttatactgttga-gtttcatattgctctcactcaaataa

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 5'ss of exon 5
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgt---------atttgctcttcaaagttcatattttttttccca-gttacttggtttatataccccaatta---tcagtcaattggacatttcatctttatgttatttgctgc-------------------------------------------
  | ||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| |||||||| || ||||| ||||  ||||| || ||||||||||||||         ||   |  ||      | | |||| |  | ||| ||| ||  | |||||    |  |||    |||      | || |  |||| | | |  |  |   |                                             
TGCAGGAGGAGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAGGTTGCCTTCCGCAATAAACTTCCAGAGgttaaattaaaatccccatttgctctcttaaatttgtagtaccatgttcctaagcttataccttcttattggtttcaaaactcttgaaacctcatttgtcttgtcctaagtatttttagttttgttctaaaggatcttttcttgaaatgtgtgtag

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G11150.1 (Arabidopsis thaliana), 5'ss of exon 5
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctcttcaaagttcatattttttttcccagttact-tggtttatataccccaattatcagtcaattggacatttca--tctttatgttatttgctgc---------
|||||||||||| ||||| |||||||| ||||||||||| || || |||||||| ||||||||  |  | ||||| | ||||||||  ||||| |||| |||||  |     |||| |   ||     |     | ||  | || |  ||    | |  |      | | ||    | ||    ||| |   | | |   ||          
CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtat--gaaaaacaaattctctaccgcatagattacttgttatgatccatcactcactgtctaggtttacttttttactttggttctctgattcactcattgttgttaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30305484|gb|CB982278.1|CB982278
EST:     ACACCCTTGATGCAAGATTGGATGTCGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|22008693|gb|BQ793727.1|BQ793727
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|87584576|gb|DY473692.1|DY473692
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|34543306|gb|CF511538.1|CF511538
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|34416720|gb|CF415474.1|CF415474
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110715183|gb|EE092944.1|EE092944
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCTTGATGAGCTGGATCATTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110401776|gb|EC968396.1|EC968396
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110368471|gb|EC932450.1|EC932450
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110372656|gb|EC936840.1|EC936840
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110702233|gb|EE080709.1|EE080709
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAAGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110426574|gb|EC992987.1|EC992987
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110401740|gb|EC968358.1|EC968358
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|34415991|gb|CF414745.1|CF414745
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110422908|gb|EC989242.1|EC989242
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110356758|gb|EC919820.1|EC919820
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|30304816|gb|CB981610.1|CB981610
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110361925|gb|EC925431.1|EC925431
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGGTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110692843|gb|EE068555.1|EE068555
EST:     ACCCCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAA                         ATT-GCAAGTGGCTCTTTGGTCA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCA
EST: gi|110428443|gb|EC994915.1|EC994915
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110379319|gb|EC944505.1|EC944505
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110717153|gb|EE092759.1|EE092759
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCTTGATGAGCTGGATCATTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110410225|gb|EC975903.1|EC975903
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110416378|gb|EC982357.1|EC982357
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110403040|gb|EC964106.1|EC964106
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|34415214|gb|CF413968.1|CF413968
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGCCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110359807|gb|EC921968.1|EC921968
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110692318|gb|EE071428.1|EE071428
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110396071|gb|EC961746.1|EC961746
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110388165|gb|EC952885.1|EC952885
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110699974|gb|EE077482.1|EE077482
EST:     -CACCCTTGATGCANGATTGGATGTTGTATTCCG-AAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCTTGATGAGCCGGATCATTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110373529|gb|EC937773.1|EC937773
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110406384|gb|EC971955.1|EC971955
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110414207|gb|EC980034.1|EC980034
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|110369246|gb|EC933400.1|EC933400
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA
EST: gi|34543391|gb|CF511623.1|CF511623
EST:     ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAG                         ATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCCTTA
genomic: ACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctc ... cctattgcagATTCGCAAGTGGCTCTTTGGTCAGGTTGCTGCATGATGAGCTGGATCATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctcttcaaagttcatattttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc

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