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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGCATCGCAATCTATTTTTTCTACACTGCTGAGCTCCCTTTTTCGAGCACCAATGTCCTTTTATGACTCGACACCTCTGGGAAGGATACTCAGTCGGgtaagatgcttaaaatatatgcatattacaaacaacagaagacttatttttttattgtcgttttgtag

Basic information

species Vitis vinifera
transcript Vv02s0025g00980.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g00980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G111903_T02 (Zea mays), 5'ss of exon 6
TGGGGCATCGCAATCTATTTTTTCTACACTGCTGAGCTCCCTTTTTCGAGCACCAATGTCCTTTTATGACTCGACACCTCTGGGAAGGATACTCAGTCGGgtaag-atgcttaaaatatatgcatattacaaacaacagaagacttattttt----ttattgtcgttttgtag---------------------------
   | ||||   |||  | ||||||    | || | |||  | || || |||||||||||||||||||| || || ||||| ||||| ||||| || |||||||| || ||||||| | ||   || |       | | |       |  |     |  |||||  ||   |                            
CAAGACATCAAGATCCTTATTTTCTCAGTTACTAAACTCATTATTCCGTGCACCAATGTCCTTTTATGATTCTACCCCTCTTGGAAGAATACTTAGCCGGgtaaggattcttaaaacaaattgttaatctccctgagatatattgagtagtgggggtggttgtcacttgccacccaaagttcaacttgcacatggtacat

upper sequence: Vv02s0025g00980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AC206266.3_FGT001 (Zea mays), 5'ss of exon 1
TGGGGCATCGCAATCTATTTTTTCTACACTGCTGAGCTCCCTTTTTCGAGCACCAATGTCCTTTTATGACTCGACACCTCTGGGAAGGATACTCAGTCGGgtaag-atgcttaaaatatatgcatattacaaacaacagaagacttattttt----ttattgtcgttttgtag---------------------------
   | ||||   |||  | |||||||   | || | |||  | || || |||||||||||||||||||| || || ||||| ||||| ||||| || |||||||| || ||||||| | ||   || |       | | |       |  |     |  |||||  ||   |                            
CAAGACATCAAGATCCTTATTTTCTAAGTTACTCAACTCATTATTCCGTGCACCAATGTCCTTTTATGATTCTACCCCTCTTGGAAGAATACTTAGCCGGgtaaggattcttaaaacaaattgttaatctccctgagatatattgagtagtgggggtggttgtcacttgccacccaaagttcaacttgcacatggtacat

upper sequence: Vv02s0025g00980.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AC234203.1_FGT004 (Zea mays), 5'ss of exon 4
-----------------------------------------------------TGGGGCATCGCAATCTATTTTTTCTACACTGCTGAGCTCCCTT---------TTTCGAGCACCAATGT---CCTTTTATGACTCGACACCTCTGGGAAGGATACTC----------AGTCGGgtaagatgcttaaaata-tatgcatattacaaacaacag---aagacttatttttttatt--gtcgttttgtag------------------------------
                                                     |  ||   |  || | | || ||| | |   ||||| |   ||           | |     |||  |   |||  |||   |     |   ||  || ||  | |          | |||      ||   |||| || ||  ||||| | | |    ||   ||   |   ||||  |||  |   |||  ||                               
TGCGCCAATGTCCTTTTTTGATTCTACCCCTCTTGGAAGGATACTTAGCCGGGTAAGGATACTTAAACAAATTGTTC-ATATCCCTGAGATATATTGGGTGgtgagattggttttcaacttgcacctcctatatattagttctattgtcaacgaccccccccccccagcaatcgaagtgaatctctaaactactagacatataaaatatgctagaccaaagttctgttttgcatttggatatttcctattgatggatgaacttgcatttttttatgcag