1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGGAGCAGGGAATACAAGAAATCCAGCACCAAATTGGCGAGGTGAATGAGATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatctgactctcttgtctagagttcgctattccctttctgattcaggctgctgactctcatttcaatttctcttttcag
species | Vitis vinifera |
transcript | Vv02s0012g01850.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTG ATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAAEST: gi|349814672|gb|FQ400310.1|FQ400310
genomic: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatc ... ctcttttcagATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAA
EST: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTG ATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAAEST: gi|349807660|gb|FQ402051.1|FQ402051
genomic: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatc ... ctcttttcagATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAA
EST: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTG ATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAAEST: gi|110690731|gb|EE068149.1|EE068149
genomic: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatc ... ctcttttcagATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAA
EST: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCNAGGAGTTATGATTG ATGATATTGGCTCCAACAEST: gi|110403262|gb|EC964685.1|EC964685
genomic: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatc ... ctcttttcagATGATATTGGCTCCAACA
EST: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTG ATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCGACAGCACAGGCAAEST: gi|349828272|gb|FQ416225.1|FQ416225
genomic: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatc ... ctcttttcagATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAA
EST: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTG ATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAAEST: gi|349823620|gb|FQ415030.1|FQ415030
genomic: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatc ... ctcttttcagATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAA
EST: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTG ATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAAEST: gi|349821234|gb|FQ404366.1|FQ404366
genomic: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatc ... ctcttttcagATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAA
EST: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTG ATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAAEST: gi|110369733|gb|EC933900.1|EC933900
genomic: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatc ... ctcttttcagATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAA
EST: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTG ATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAAEST: gi|349817337|gb|FQ405341.1|FQ405341
genomic: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatc ... ctcttttcagATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAA
EST: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTG ATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAA
genomic: GATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatc ... ctcttttcagATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGAGCAGGGAATACAAGAAATCCAGCACCAAATTGGCGAGGTGAATGAGATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGgtaactcatctgactctcttgtctagagttcgctattccctttctgattcaggctgctgactctcatttcaatttctcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG