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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGTCTTTGATTTACATCCAAACTACAAAAATATTCACCAAAAGATCTACGTCCGCATCACCAACTTACCGGTTTATGATCAGATACGCAACATACGgtaacttggaaatcattgtcagatactttgcatcttattaaagtcctatttgggttccaagttcaccaatgtttggtgctttccag

Basic information

species Vitis vinifera
transcript Vv01s0150g00390.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 5
ATGTTGTCTTTGATTTACATCCAAACTACAAAAATATTCACCAAAAGATCTACGTCCGCATCACCAACTTACCGGTTTATGATCAGATACGCAACATACGgtaacttggaaatcattgtcagatactttgcatcttattaaagtcctatttgggttccaagttcaccaatgtttggtgctttccag---
||||||||||||| ||||||||||| ||||  ||||| ||||||||||| || || ||||| |||||||| || |||||||||||||| || || ||| ||||  |   ||| |||     |||   || |  | |  |     ||| |          |       ||  || | | ||||  ||   
ATGTTGTCTTTGAATTACATCCAAATTACAGGAATATACACCAAAAGATTTATGTGCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGgtagataaaaaaacataact-gatgtgttactccattctccttccctttccattggatgaaaaacttaaaattggcttctttggagcag

upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G36680.1 (Glycine max), 5'ss of exon 5
ATGTTGTCTTTGATTTACATCCAAACTACAAAAATATTCACCAAAAGATCTACGTCCGCATCACCAACTTACCGGTTTATGATCAGATACGCAACATACGgtaacttggaaatcattgtcagatactttgcatcttattaaagtcctatttgggttccaagttcaccaatgtttggtgctttccag
  ||||||||||| ||||||||||| ||||  ||||| |||||||| || || || ||||| |||||||| || |||||||||||||| || || ||| ||||      |||  | ||     |   |    |||  ||    | | | | |      ||  | |  | || ||  |      |||
GCGTTGTCTTTGAATTACATCCAAATTACAGGAATATACACCAAAAAATTTATGTTCGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGgtagagaaaaaaaaactgatgtgttactccattctccttccctttccaatggatgaaaaaacttaaaattggtttctttggagcag