Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAGgtagttgtatttctaattgtcacatgcataaaatcttatatggttattgaactctatttatgcaagaggtatattcaatatataattttattttctttaaaactgtgcttagttttattttctcccattcatgcaaatttctttagtttttgctataagggatattgtcttagtgcag

Basic information

species Vitis vinifera
transcript Vv01s0150g00030.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 5
GTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAGgtagttgtatttctaattgtcacatgcataaaatcttatatggttattgaactctatttatgcaagaggtatattcaatatataattttattttctttaaaactgtgcttagttttattttctcccattcatgcaaatttctttagtttttgctataagggatattgtcttagtgcag
||||||||||||||||||||| | ||| |  | |||||| | ||||||||||||||||| ||||||   ||||    |||| |||  || | | |   ||         |||||    ||| |||   ||| |  ||| |||    |    | | | ||| | |  | | || ||                                                                  
GTTGAGCACATGCTAAATGACAGATTGCTGAATTTTGTGGACATTGATTTGCATGATGTTAAGgtaccagtat----aatt-tcatgtgaaaacagaatt---------ttgaa----attcatg-gtgagattaattaaatg-gcatgcctttctgcttcatacatttactcag------------------------------------------------------------------

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 5
GTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAGgtagttgtatttctaattgtcacatgcataaaatcttatatggttattgaactctatttatgcaagaggtatattcaatatataattttattttctttaaaactgtgcttagttttattttctcccattcatgcaaatttctttagtttttgctataagggatattgtcttagtgcag
|||||| | ||||||||||||  |||| | ||||||||| | ||||||||||||||||| |||||| | | ||    |||  ||   |      ||  ||  ||   ||||    |||   ||          || ||  |  | | || || |||  ||                                                                                 
GTTGAGAATATGCTAAATGACAAGTTGCTGCAATTTGTGGACATTGATTTGCATGATGTGAAGgtactggcat----aatcttctatt------aacattggataaatatttggatctgcataca--------atgttttaactttgatattgtttgtttag-------------------------------------------------------------------------------

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 5
GTTGAGCACATGCTAAATGACCGGTTGATACAATTTGTGAATATTGATTTGCATGATGTCAAGgtagttgtatttctaattgtcacatgcataaaatcttatatggttattgaactctatttatgcaagaggtatattcaatatataattttattttctttaaaactgtgcttagttttattttctcccattcatgcaaatttctttagtttttgctataagggatattgtcttagtgcag
|||||||||||| |||||||| | ||| | || ||||| ||||||||||| || || |||||||||  ||| |||||     |  | |  ||    |||  | |    |   || |   | ||   |     | | || |   | | | ||   | | |  |||||||   |                                                                     
GTTGAGCACATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGATTTACAAGAGGTCAAGgta-ctgtttttct-----ttgcttttattttttctgttctaaagaaaaaatttattgta---atattttttgtttaccctgtcagttagatgtgtacaaaactgatgt---------------------------------------------------------------------