Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGGGAATACCAAGGTGCATACAAGgttagtggcatgctttatgaatccataattttctttttgcttggaaaccattcatatatttttttagttcatctagtgatcataatttgccttcattttcatatag

Basic information

species Vitis vinifera
transcript Vv01s0146g00310.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351043256|gb|FQ443977.1|FQ443977
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351034494|gb|FQ448170.1|FQ448170
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351023552|gb|FQ432935.1|FQ432935
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349817767|gb|FQ407756.1|FQ407756
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|77587570|gb|DV222950.1|DV222950
EST:     CCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: CCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351030938|gb|FQ438974.1|FQ438974
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|77577175|gb|DV217284.1|DV217284
EST:     CCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: CCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|161721102|gb|FC070019.1|FC070019
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349814730|gb|FQ409953.1|FQ409953
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351029889|gb|FQ427729.1|FQ427729
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351027179|gb|FQ440047.1|FQ440047
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349817147|gb|FQ405152.1|FQ405152
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|110365214|gb|EC927841.1|EC927841
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349828778|gb|FQ418513.1|FQ418513
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351017574|gb|FQ435927.1|FQ435927
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|110685369|gb|EE062030.1|EE062030
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|71863160|gb|DT012215.1|DT012215
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|110365136|gb|EC928913.1|EC928913
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|71863702|gb|DT012757.1|DT012757
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|110711640|gb|EE088353.1|EE088353
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349832945|gb|FQ423067.1|FQ423067
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349818046|gb|FQ408821.1|FQ408821
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349830010|gb|FQ420270.1|FQ420270
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349830031|gb|FQ420291.1|FQ420291
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|110713083|gb|EE088693.1|EE088693
EST:     GGGTGAAGAGGTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GGGTGAAGAGGTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351015619|gb|FQ427104.1|FQ427104
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351028389|gb|FQ427285.1|FQ427285
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|110719438|gb|EE094576.1|EE094576
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349826357|gb|FQ417854.1|FQ417854
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349815315|gb|FQ400470.1|FQ400470
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|110711678|gb|EE088431.1|EE088431
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|161715045|gb|FC064252.1|FC064252
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351014795|gb|FQ437995.1|FQ437995
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|294966748|gb|GW837767.1|GW837767
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|71861175|gb|DT010230.1|DT010230
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351027102|gb|FQ439963.1|FQ439963
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|351029935|gb|FQ427775.1|FQ427775
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|349812258|gb|FQ411853.1|FQ411853
EST:     GTTGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|110398758|gb|EC965232.1|EC965232
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|110718337|gb|EE095058.1|EE095058
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|161716774|gb|FC067499.1|FC067499
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|110702444|gb|EE081168.1|EE081168
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
EST: gi|161710596|gb|FC058147.1|FC058147
EST:     GTCGGGGAATACCAAGGTGCATACAAG                         ATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC
genomic: GTCGGGGAATACCAAGGTGCATACAAGgttagtggca ... tttcatatagATTTCTAAAGGGCTTTTGGAGAAATATGGCCCTGAGAGGGTTCTGGATACC