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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAGgtatctaattttttgcatgacctgggcttaatttttttattctctgttttgttttgttggatgatatttttcaatggctatatctaagcctcttttaact...

Basic information

species Vitis vinifera
transcript Vv01s0146g00120.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0146g00120.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G10680.1 (Glycine max), 5'ss of exon 7
GATGGTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAGgtatctaattttttgcatgacc-tgggcttaatttttttattctctgttttgttttgttggatgatatttttcaatggctatatctaagcctcttttaact-
|||||||||||||| ||||| ||||| |||||||| |||||  |  |  |  |||||   ||    || | |  ||      ||   || | | |||    ||| |  |      |  | |||     ||   | | ||    |||  |||  || 
GATGGTTATCGTGCTGTTCGATTCAACCCATATTTGTGGCCGCCCAGGGAAAAGgtaggcaacccctttctttcccacacatttgtcttgtctgttcatgatttagggtgaagatacaaaattgagtcattcttttttccc--ccttatttttcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351039710|gb|FQ464748.1|FQ464748
EST:     GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCGG                         ATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCGGGGGAGCTTGGA
genomic: GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAGgtatctaatt ... atctctgcagATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
EST: gi|33407684|gb|CF213311.1|CF213311
EST:     GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAG                         ATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
genomic: GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAGgtatctaatt ... atctctgcagATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
EST: gi|351056524|gb|FQ455176.1|FQ455176
EST:     GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAG                         ATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
genomic: GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAGgtatctaatt ... atctctgcagATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
EST: gi|110382591|gb|EC946898.1|EC946898
EST:     GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAG                         ATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
genomic: GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAGgtatctaatt ... atctctgcagATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
EST: gi|110724885|gb|EE101102.1|EE101102
EST:     GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAG                         ATGACCAATGAAATTGGGAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
genomic: GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAGgtatctaatt ... atctctgcagATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
EST: gi|351032774|gb|FQ462488.1|FQ462488
EST:     GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAG                         ATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
genomic: GTTATCGTGCAGTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAGgtatctaatt ... atctctgcagATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
EST: gi|110367255|gb|EC931182.1|EC931182
EST:     GTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAG                         ATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA
genomic: GTTCGCTTCAATCCATATTTATGGCCATCTGGTCAGCAGgtatctaatt ... atctctgcagATGACCAATGAAATTGGAAAGGCTATGTTCTCAAAAGCAGGGGAGCTTGGA