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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAACATGATTGTGTATTTGGTGATGACTTTGATCTAAATGAGATAACTGTTGTTTCAGAGgtacagagcaatgcctctcttctgttaacattagtgatatccaagtaatatattcacagtgaagaactgatatacatagtgcccttgcacag

Basic information

species Vitis vinifera
transcript Vv01s0137g00630.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G30770.1 (Glycine max), 5'ss of exon 6
TGAAACATGATTGTGTATTTGGTGATGACTTTGATCTAAATGAGATAACTGTTGTTTCAGAGgtacagagcaatgcctctcttctgttaacattagtgatatccaagtaatatattcacagtgaagaactgatatacatagtgcccttgcacag----------------------------------------
|||||||||||||||| |||||||||||||| ||| ||||||| ||||    ||| || ||||||     || | ||      || ||| | |      || |          |||| ||   ||  ||||| ||   || |    || ||  |                                        
TGAAACATGATTGTGTGTTTGGTGATGACTTGGATTTAAATGAAATAAGCTATGTGTCTGAGgtattctacagttccctctccctcttaccctcttcactacct------ctcattctcacataaacactgagattggtaatatttttccaatgatttattggctaaaatttgtcatatggcatgtcatgacag