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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatatgactgatttacgatgatatgatttccccaacttcatgaatattttggggcttaaaacttgttagtgaatttaaatggtcttaacag

Basic information

species Vitis vinifera
transcript Vv01s0137g00580.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 5'ss of exon 5
TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatatgactgatttacgatgat-atgatttccccaacttcatgaatattttggggcttaaaacttgttagtgaatttaaatggtc--ttaacag
||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||| || | |   ||| |   || ||||  |  ||||       ||     ||  |||||||     || |||||||| |||||    |   |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacatcattagattatggcaattatgaactaaccaaaagagataaccccatgaagcttaaa---cattggtgaatttgaatggatggtgggcag

upper sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G063792_T04 (Zea mays), 5'ss of exon 5
TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatatgactgatttacgatgat-atg-atttccccaacttcatgaatattttggggcttaaaacttgttagtgaatttaaatggtc--ttaacag
||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||   |   ||| ||  || ||| | |  |||||    || |  || | || |||||||    ||| ||||||||  ||      | | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattatgacaattatgcactgacccaaaaatataaccatat-ggtgcttaaa---cgttggtgaatttggattaatggtgagcag

upper sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G179308_T01 (Zea mays), 5'ss of exon 5
TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatatgactgatttacgatgat-atgatttc-cccaacttcatgaatattttggggcttaaaacttgttagtgaatttaaatggtc--ttaacag
||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||   |   ||  |   || ||||  |  |||||    || |  || | || |||||||     || ||||||||  ||      | | |||
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgt-ggtgcttaaa---cattggtgaatttggatcaatggtgagcag

upper sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 5
TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatatgactgatttacgatgat-atga-tttccccaacttcatgaatattttggggcttaaaacttgttagtgaatttaaatggtc--ttaacag----
||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||   |   ||  |   || ||||  |  |||||    || |  || | || |||||||     || ||||||||  ||      | | |||    
TTGTGTTCAAATTCGGAACTGGTTTGACTATCGTAACCATATCTGTATTgtaagtacattgttagattgtggcaattatgaactgacccaaaaagataaccatgt-ggtgcttaaa---cattggtgaatttggatcaatggtgagcaggtct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110709438|gb|EE084898.1|EE084898
EST:     TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT                         GTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatat ... gtcttaacagGTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
EST: gi|110732680|gb|EE108178.1|EE108178
EST:     TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT                         GTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCAGAAAAACAAT
genomic: TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatat ... gtcttaacagGTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
EST: gi|161716341|gb|FC064657.1|FC064657
EST:     TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT                         GTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatat ... gtcttaacagGTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
EST: gi|110698778|gb|EE076668.1|EE076668
EST:     TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT                         GTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatat ... gtcttaacagGTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
EST: gi|110712429|gb|EE090038.1|EE090038
EST:     TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATT                         GTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT
genomic: TTGCGGTCAAATACGGAACTGGTTTGACTATCGTAACCATATTTGTATTgtaagtatat ... gtcttaacagGTATTTGAGATGCTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAAT