Sequence
atgc intronic sequence ATGC exonic sequenceATCAACAGAAGGTCGGCAGTGCAAACCCTTTAATCCTCTCCTTGGGGAAACCTATGAGGCTGATTATCCTGATAAAGGTCTTCGCTTCTTCTCTGAAAAAgtaattccctctgccactaaaatttgttaagcatcagtgtatcttttacttgtgatggtaacctcacaattttactggacttcattctcaatcatgatga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os12g18770.1 (Oryza sativa), 5'ss of exon 5
ATCAACAGAAGGTCGGCAGTGCAAACCCTTTAATCCTCTCCTTGGGGAAACCTATGAGGCTGATTATCCTGATAAAGGTCTTCGCTTCTTCTCTGAAAAAgt-----aattccctctgc-cactaaaatttgttaagcatcagtgtatcttttacttgtgatggtaacctcacaattttactggacttcattctcaatcatgatga-------------------------
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TTCAACTGAAGGTCGGCAATGCAAACCGTTCAATCCTTTACTGGGTGAAACATATGAAGCTGATTATCCAGATAAAGGACTTCGATTTTTCTCTGAAAAGgttgtgtagttatttgagagcatggagaattattccttactaaattatttcctaattctgaatgct-tttcttagtgttgtgtaatttttttgagaaacatgttcttattgtgtgttaacgtgtctttcag
upper sequence: Vv01s0137g00290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G156608_T04 (Zea mays), 5'ss of exon 2
ATCAACAGAAGGTCGGCAGTGCAAACCCTTTAATCCTCTCCTTGGGGAAACCTATGAGGCTGATTATCCTGATAAAGGTCTTCGCTTCTTCTCTGAAAAAgtaattccctctgccactaaaatttgttaagcatcagtgtat-cttttacttgtgatggtaac-ctcacaattttactggacttcattctcaatcatgatga
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TTCAACCGAAGGTCGGCAATGCAAACCCTTCAATCCCCTACTGGGGGAAACATATGAAGCTGATTATCCAGATAAAGGACTTCGTTTTTTCTCTGAAAAGgttgcacaa-ctgttcgaattctgaactaagttttagtccgttctgcaacacttgtccatagcgcacacagtctgagaaagtattactttcaggaaaaaga-
upper sequence: Vv01s0137g00290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G13170.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCAACAGAAGGTCGGCAGTGCAAACCCTTTAATCCTCTCCTTGGGGAAACCTATGAGGCTGATTATCCTGATAAAGGTCTTCGCTTCTTCTCTGAAAAAgtaattccctc----tgccactaaaatttgttaa--gcatcagtgtatcttttacttgtgatggtaacctcacaattttactggacttcattctcaatcatgatga-------------------------------------------------
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GTCCACGGAAGGCAGGCAATGCAAACCTTTCAACCCTCTACTTGGTGAGACCTATGAAGCTGATTATCCAGATAAAGGACTTCGTTTCTTCTCTGAGAAGgcaagtcaaccatcacatcattctaatgtagaagttgtattgaaaaatcatgcatgaatgtgaaaaactttaacacttcattatctttttaaatctatcagacatatataatagcaacccctcaccttctttgccaccataattctcttgttcag
upper sequence: Vv01s0137g00290.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S40_145V6.1 (Physcomitrella patens), 5'ss of exon 5
ATCAACAGAAGGTCGGCAGTGCAAACCCTTTAATCCTCTCCTTGGGGAAACCTATGAGGCTGATTATCCTGATAAAGGTCTTCGCTTCTTCTCTGAAAAAgta-attccctctgccactaaaatttgttaagcatcagtgtatcttttac--ttgtgatggtaacctcacaattttactggacttcattctcaatcatgatga
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TTCAACAGAGGGCCGTACTTGTAAACCTTTTAATCCCCTGCTTGGTGAGACTTATGAAGCTGATTATCCTGACAAGGGTCTAAGGTTCTGCTCTGAAAAGgtgtgatatgattgccatcctctattgtgatgcttttttggacatattaaaatttctgctctaattttattgattttt---attatattattaattaatttatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110419051|gb|EC985243.1|EC985243EST: CCTATGAGGCTGATTATCCTGATAAAGGTCTTCGCTTCTTCTCTGAAAAA GTGAGTCACCACCCAATGATTGTTGCTTGCCACTGTGAGGGGAGAGGCTGG
genomic: CCTATGAGGCTGATTATCCTGATAAAGGTCTTCGCTTCTTCTCTGAAAAAgtaattccct ... tgttgtttagGTGAGTCACCACCCAATGATTGTTGCTTGCCACTGTGAGGGGAGAGGCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCAACAGAAGGTCGGCAGTGCAAACCCTTTAATCCTCTCCTTGGGGAAACCTATGAGGCTGATTATCCTGATAAAGGTCTTCGCTTCTTCTCTGAAAAAgtaattccctctgccactaaaatttgttaagcatcagtgtatcttttacttgtgatggtaacctcacaattttactggacttcattctcaatcatgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctgc