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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGTgtaagcctctggggcttttgtctataatcttgattccatttgagatttaggcttcaagtattcttctaaaaggctatacttctgtattcattctgctgacttgtttatgctgaatgcag

Basic information

species Vitis vinifera
transcript Vv01s0127g00710.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00710.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G10600.2 (Arabidopsis thaliana), 5'ss of exon 3
-------------------------------------------------------------------AAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGTgtaagcctctggggcttttgtctataatcttgattccatttgagatttaggcttcaagtattcttctaaaaggctatacttctgtattcattctgctgacttgtttatgctgaatgcag
                                                                    |||  || |  || |||||||| |||||||||||||| ||||| ||||||||||| ||   ||| ||         |||      || |||| |||    ||   |  ||     | | ||  | | || |   |||| | ||  | |                                 
GGTTCTTCGTTTTTCGAGTTTCATGAACCTGATGgtaattacatttctatttctgttcatgctgtaggaaagaggaattttttatgtaaccactctgataatacctaagcaagaatcaacttctaattctgtgagttat-----cttagaaagattatctcgatcattttgtggtattcaaaatgaggtgct-tactcaggtgctaaaattg-gcag--------------------------------

upper sequence: Vv01s0127g00710.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G10600.3 (Arabidopsis thaliana), 5'ss of exon 3
AAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGTgtaagcctctggggcttttgtctataatcttgattccatttgagatttaggcttcaagtattcttctaaaaggctatacttctgtattcattctgctgacttgtttatgctgaatgcag
 |||  || |  || |||||||| |||||||||||||| ||||| ||||||||||| ||   ||| ||         |||      || |||| |||    ||   |  ||     | | ||  | | || |   |||| | ||  | |                                 
GAAAGAGGAATTTTTTATGTAACCACTCTGATAATACCTAAGCAAGAATCAACTTCTAATTCTgtgagttat-----cttagaaagattatctcgatcattttgtggtattcaaaatgaggtgct-tactcaggtgctaaaattg-gcag--------------------------------