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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGTCCAGAACTCTATGGGGACAACTATCCTAGGTTCTTTACTTACTGGACTgtaagtggaatcattttttagcttctttcctttcccttcctttcccttcatttcaggaaaataagagtgattttattaatatatacag

Basic information

species Vitis vinifera
transcript Vv01s0127g00010.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G10750.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTAGTCCAGAACTCTATGGGGACAACTATCCTAGGTTCTTTACTTACTGGACTgtaagtggaatcattt---tttagcttctttcctttccct----tcctttcccttcatttcaggaaaataagagtgatttta---ttaatatatacag------------------------
|| |||||||| |||||||| || || || || || |||||||||||||||||||||||| |   |   |    | ||| | |    |||        |  ||   |||  | |  | ||| |     |  |||||   ||  ||||   |                         
GTGAGTCCAGAGCTCTATGGAGATAATTACCCAAGATTCTTTACTTACTGGACTgtaagtagttcctcctatgctaagcctttcatttttataaataataattatgctttttgtatgtaaattctatatagttttaagttttctataattaattagttcttatgttttggcaacag