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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGgtaaacttgttaagatggtccaaatgcattccaccacttctttttatgtctgtctgctaaactaaaattttattgtttatag

Basic information

species Vitis vinifera
transcript Vv01s0026g01960.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g01960.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g58080.1 (Oryza sativa), 5'ss of exon 5
AAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGgtaaacttgttaagatggtccaaatgcattccaccacttctttttatgtctg-tctgctaaactaaaattttattgtttatag---------------------------------------------------------------
 | || ||||||| |  ||    | |||||||||||||| || ||||| || |||||| | ||||| ||||||||||| || || |||| | | || | | | |     ||| |  |  || || | |||    |   | ||  ||| || |         || || |                                                               
TACATATAAAGGTTCAAGATTTCGAGCAGCTATTATTTTCGTTCTTGGGTTCTGGATGTTGGATCTCGCAAACAATACAGTTCAAgtaagcctcttcaaaagtt-----tgcttgtcgtcatttgtatttgcaccaaatttgtcaaaatatatgccatgaattaattggattacctcaccatggatgttctctaatatcctgtttctcctttcctttttccctacatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352778247|gb|FQ465557.1|FQ465557
EST:     TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGGAAACAATACGGTGCAG                         GGCCCAGCTCGTG
genomic: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGgtaaacttgt ... ttgtttatagGGCCCAGCTCGTG
EST: gi|110698594|gb|EE076268.1|EE076268
EST:     TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAG                         GGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
genomic: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGgtaaacttgt ... ttgtttatagGGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
EST: gi|352776811|gb|FQ472698.1|FQ472698
EST:     TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAG                         GGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
genomic: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGgtaaacttgt ... ttgtttatagGGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
EST: gi|110723267|gb|EE100385.1|EE100385
EST:     TTTTTGTCCTTGGATTATGGATGCTAGATCTTGCCAACAATACGGTGCAG                         GGGCCAGCTCGTGCTCTTCTAGCTGATCTATCAG
genomic: TTTTTGTCCTTGGATTTTGGATGCTAGATCTTGCAAACAATACGGTGCAGgtaaacttgt ... ttgtttatagGGCCCAGCTCGTGCTCTTCTAGCTGATCTATCAG