1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAGGAAGGTAAGGTCCGGAAGGTGTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctcttttctttcaaaccttgtcggtgaattttgggttattacttgctttattatgccttaataatatcgctctctgttatttgtcttcttttct...
species | Vitis vinifera |
transcript | Vv01s0026g01720.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCAEST: gi|352785896|gb|FQ475899.1|FQ475899
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCA
EST: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCAEST: gi|26257980|gb|CA809043.1|CA809043
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCA
EST: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCAEST: gi|351028060|gb|FQ425961.1|FQ425961
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCA
EST: GTTGAAGGTAAAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATEST: gi|26257975|gb|CA809038.1|CA809038
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACAT
EST: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCAEST: gi|26257143|gb|CA808206.1|CA808206
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCA
EST: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGGTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCAEST: gi|110723587|gb|EE101073.1|EE101073
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCA
EST: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCAEST: gi|28959463|gb|CB339732.1|CB339732
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCA
EST: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCAEST: gi|26257138|gb|CA808201.1|CA808201
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCA
EST: TTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCCTTCAATCTCA GTGTTCAAAACAAGCTTTTGAATATGGATGAGAAACATTTATATCCCTGTCEST: gi|110690593|gb|EE067826.1|EE067826
genomic: TTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTC-TTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAA-CATTTATATCCCTGTC
EST: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGTTCAAA-CAAGCTTTAGAATATGGATGAGAA-ACTTTATATCCCTGTCEST: gi|28958978|gb|CB339490.1|CB339490
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACA-TTTATATCCCTGTC
EST: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCAEST: gi|351043541|gb|FQ431015.1|FQ431015
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCA
EST: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCA GTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCA
genomic: GTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctct ... tgatttgaagGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGAAGGTAAGGTCCGGAAGGTGTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAgtaattctcttttctttcaaaccttgtcggtgaattttgggttattacttgctttattatgccttaataatatcgctctctgttatttgtcttcttttct
- - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - CAGATG