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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGCTAGACATGAAGTGTTGGGATGCCAGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctttttaaattttaactattgaatctttgccttgtaattttgtaacaaattagtggaatggattttccctgataattacatctactgctatttttccgcag

Basic information

species Vitis vinifera
transcript Vv01s0026g01590.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720305|gb|FC071158.1|FC071158
EST:     AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG                         GTAAAGGAAAGCATCCAAACTGAGAAAGCATGCACAGTACGTATCTTAAAT
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
EST: gi|22010530|gb|BQ795564.1|BQ795564
EST:     AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG                         GTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
EST: gi|254917156|gb|GR905982.1|GR905982
EST:     AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG                         GTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
EST: gi|110427355|gb|EC993791.1|EC993791
EST:     AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG                         GTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
EST: gi|110379815|gb|EC945035.1|EC945035
EST:     AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG                         GTAAAGGAAAGCATCCAAACTGAGAAAGCATGCACAGTACGTATCTTAAAT
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT
EST: gi|71859761|gb|DT008816.1|DT008816
EST:     AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAG                         GTAAAGGAAAGCATCCAAACTGAGAAAGCATGCACAGTACGTATCTTAAAT
genomic: AGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGgtttatgctt ... ttttccgcagGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAAT