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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAGgtatggcattagaattaagcatcacatccaaagattgatagttagagacgtgctttcctggtttgattcaaacattttgcag

Basic information

species Vitis vinifera
transcript Vv01s0026g00350.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110422036|gb|EC988347.1|EC988347
EST:     TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG                         ACGATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTAGGAGCTGTT
genomic: TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAGgtatggcatt ... cattttgcagACCATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTT
EST: gi|110416844|gb|EC982850.1|EC982850
EST:     TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG                         ACGATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTAGGAGCTGTT
genomic: TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAGgtatggcatt ... cattttgcagACCATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTT
EST: gi|110711993|gb|EE089106.1|EE089106
EST:     TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG                         ACCATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTT
genomic: TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAGgtatggcatt ... cattttgcagACCATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTT
EST: gi|110402919|gb|EC963794.1|EC963794
EST:     TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG                         ACGATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTAGGAGCTGTT
genomic: TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAGgtatggcatt ... cattttgcagACCATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTT
EST: gi|71866843|gb|DT015898.1|DT015898
EST:     TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG                         ACCATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTAGGAGCTGTT
genomic: TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAGgtatggcatt ... cattttgcagACCATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTT
EST: gi|110702512|gb|EE081308.1|EE081308
EST:     TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG                         ACCATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTT
genomic: TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAGgtatggcatt ... cattttgcagACCATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTT
EST: gi|77581829|gb|DV219868.1|DV219868
EST:     TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAG                         ACGATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTAGGAGCTGTT
genomic: TATCCAAGGACATGGGAAGCCCAATTCCAGTCTGGGGTAAAGgtatggcatt ... cattttgcagACCATTGCGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTT