Sequence
atgc intronic sequence ATGC exonic sequenceAGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgattgcccatgctgttttgttttccaatgcaatgtgaacttggggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G832989_T01 (Zea mays), 5'ss of exon 5
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgattgcccatgctgttttgttttccaatgcaatgtgaacttggggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
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AGCGGAAAGGACTGTACAAATCGCAATGGCTAAAGCTGCTATGGTTGATGACATGCAAAATAAGAACCAAGAGTTGATGAAGCAAATTGAAATTTGCCAGgtaaatagatt--cttttgtaccttacaagtctatacaat---aaattaaataat-taaccagtaaagtcatctcgattgaacttatttgttggttaccttcctggaatgcag--------------------------------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G017525_T01 (Zea mays), 5'ss of exon 1
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgattgcccatgctgttttgttttccaatg-caatgtgaacttggg-gcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
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AGCGGAAAGGACGGTTCAGATGGCACTGGCAAAAGCTTCCTTGGTGGATGATCTGCAAAACAAAAACCAAGAGTTGATGAAACAGATTGAGATATGCCAGgtac-gcgacagtggagatattcattgacactagtaactttaccagcttgtttgcccataagctaacagtatatgaggctttcctgttgcaccaaacag------------------------------------------------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G09390.1 (Glycine max), 5'ss of exon 5
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgattgcccatgctgttttgttttccaatgcaatgtgaact-tggggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
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AGCTGAGAGGACTGTCCAGGTTGCCTTGGCTAAGGCCTCCATGGTGGATGACCTGCAGAACAAAAATCAAGAGCTAATTAAACAGATTGAGATTTGCCAGgtattgcaatcttgtatgattattctctctccaggtgtgtgagaaccataatatgtaacttctatcttcggactttgccatcaacttcctcag-----------------------------------------------------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G26540.1 (Glycine max), 5'ss of exon 5
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgattgcccatg-ctgttttgttttccaatgcaatgtgaacttggggcatattatcttt-tcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
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AGCTGAGAGGACTGTCCAGGTTGCCCTGGCTAAGGCATCCATGGTGGATGATCTGCAGAACAAAAATCAAGAGCTAATTAAACAGATTGAGATTTGCCAGgtattgcaatcttgtatgattattctctctcctggtgtg-tgagaa-tcataatatgtaacttctatctctgactttgccatcaacttcctcag-----------------------------------------------------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G05100.1 (Glycine max), 5'ss of exon 5
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtatt-gtgattgcccatgctgttttgttttccaatgcaatgtgaacttggggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
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AGCTGAGAAGACTGTACAGATTGCCTTGGCTAAGGCCTCCATGGTGGATGATCTCCAAAATAAAAATCAAGAGCTAATTAAACAGATTGAGATTTGCCAGgtatttgcaattttgtattgtgtttctctctcaagtatgcca-gacataataatgtaatttctgacatttggtttcatcatcacctctcccag-----------------------------------------------------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G34560.1 (Glycine max), 5'ss of exon 5
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtatt-gtgattgcccatgctgttttgttttccaatgcaatgtgaacttggggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
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AGCTGAGAAGACTGTACAGATTGCCTTGGCTAAAGCCTCCATGGTGGATGATCTCCAAAATAAAAATCAAGAGCTAATTAAACAGATTGAGATTTGCCAGgtatttgcaatttcgtatggtgtttccctctccaagt--atgccagcctta---ataatgtaatttcttatatttggttttggtatcatc----atcacctctcctag--------------------------------------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G14840.2 (Arabidopsis thaliana), 5'ss of exon 5
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgattgcccatgctgttttgttttc-caatgcaatgtgaacttggggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
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CGCTGAAAGGACAGTTCAGTCTGCATTGGCAAAGGCTTCAATGGTTGATGATCTCCAGAATAAGAACCAAGAATTGATGAAACAGATTGAAATTTGTCAGgtat-------gtctatatcatttcttttacatattggaacaccagaatagggtatctcttccttttcttaccactgtggtggccttatttgttgata----cattggttaaaatag-----------------------------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G68060.1 (Arabidopsis thaliana), 5'ss of exon 5
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgattgcccatgctgttttgttttccaatgcaatgtgaacttggggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
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TGCTGAGAGGACTGTTGAAACTGCTCTGGCGAAAGCTGCTTTAGTTGATGATCTTCAGAATAAGAACCAAGAGTTGATGAAACAAATAGAAATCTGTCAGgtgctgtactcattatcatcttctttgtatctagt-tagtcaggctttggatgccttctacttatcactcattgtttgtta-ataatttctat----tatctgtttgattctttag-----------------------------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G24764.1 (Arabidopsis thaliana), 5'ss of exon 5
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgattgcccatgctgttttgttttccaatgcaa--tgtgaacttgg-ggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
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AGCTGAGAGGACCGTTGAAGCTGCCATGGCAAAAGCCGCTATGGTTGATGATCTTCAGAATAAGAACCAGGAGCTAATGAAGCAAATTGAAATCTGTCAGgttctgtggtcgcc-atcttgttctttgtatttacttaatctatggatttgccaacaatctgattaactttattttctgttttag---------------------------------------------------------------------
upper sequence: Vv01s0011g05790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G01750.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgattgcccatgctgttttgttttccaatgcaatgtgaacttggggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaa-ttagcatgagtttatatgtcaaatccttttgtatactag
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TGCTGAAAGAACTGTTCAGTCTGCTCTTGCAAAGGCTTCAATGGTTGATGACCTCCAGAATAAAAACCAAGAGCTAATGAAACAGATAGAAATTTGTCAGgtatcactttcgcc-----tcctttacccagcagtactataaattcctggatc------tctctccttcgttttcgt---gagcatgccttgttta----tcgattgttcaaattag-----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719957|gb|FC067712.1|FC067712EST: ATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAG GAAGAAAATAAAATTTTGGATAAGATGCATCGCCAAAAGGTTGCAGAGGTT
genomic: ATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgat ... tgtatactagGAAGAAAATAAAATTTTGGATAAGATGCATCGCCAAAAGGTTGCAGAGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCTGAGAGGACTGTTCAGGTTGCATTGGCAAAGGCCTCTATGGTGGATGATCTTCAGAATAAGAACCAAGAGCTGATGAAACAAATAGAAATTTGCCAGgtattgtgattgcccatgctgttttgttttccaatgcaatgtgaacttggggcatattatcttttcttttattttgttttggattttttttgtgtaatcttcctttgtttaattagcatgagtttatatgtcaaatccttttgtatactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT