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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTACTGGAAAGCCCTTGTTTCCTGGTAAAAATGTGGTCCAGCAATTGGATCTGATGACTGATTTGCTTGGCACCCCTTCTTATGAATCTATTGCGAGGgtatgttctcaattttcagttggttttccttctagggaaactagtcatgattttaagcagtagcctctctgagttttaatgttacatttattctaaactaggatgtgctcttgttttctaatgattttcatcttttacaatgcctgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g04920.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 5
GCTTACTGGAAAGCCCTTGTTTCCTGGTAAAAATGTGGTCCAGCAATTGGATCTGATGACTGATTTGCTTGGCACCCCTTCTTATGAATCTATTGCGAGGgtatgttctcaattttcag--ttg-gttttccttctagggaaactagtcatgattttaagcagtagcctctctgagttttaatgttacatttattctaaactaggatgtgctcttgttttctaatgattttcatcttttacaatgcctgcag
|||||| ||||||||  | ||||| || |||||||| || || ||||||||||| ||||||||| | |||||||| |||||    |||||  |||| | ||||| |||     || ||   ||| |  |||  || || | ||    |       | |       |  | |     | || |||    |||  |||  |||                                                   
GCTTACAGGAAAGCCACTCTTTCCAGGGAAAAATGTTGTGCATCAATTGGATCTCATGACTGATCTACTTGGCACTCCTTCAGCAGAATCCCTTGCTAAGgtatattcaatccttgcaagcttgtgccttcactcaagtgcaatgtattgactcctcactagtctgtgtgttcacttctttatgcagaattc-ttcgcaac---------------------------------------------------

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G18040.2 (Arabidopsis thaliana), 5'ss of exon 4
GCTTACTGGAAAGCCCTTGTTTCCTGGTAAAAATGTGGTCCAGCAATTGGATCTGATGACTGATTTGCTTGGCACCCCTTCTTATGAATCTATTGCGAGGgtatgttctcaattttcagttggttttccttctagggaaactagtcatgattttaagcagtagcctctctgagttttaatgttacatttattctaaactaggatgtgctcttgttttctaatgattttcatcttttacaatgcctgcag
||| ||||| ||||| ||||||||||| || |||||||| || ||||||||| | ||||||||||||||||| || ||| ||   ||| ||||||| |||||  |||   |   ||   |   | |   | |||        |  |  || |||  |   |  | | |  || || | |  ||| |  | || ||||| | ||                                              
GCTCACTGGGAAGCCATTGTTTCCTGGGAAGAATGTGGTGCACCAATTGGATATTATGACTGATTTGCTTGGTACTCCTCCTCCCGAAGCTATTGCAAGGgttagttggtagagttatctatttctgtttgctaaaacttgcatgctagaatttctgtgatgtcttat--gacttatga-attaaaagttttataaaccatga----------------------------------------------

upper sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G73670.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTTACTGGAAAGCCCTTGTTTCCTGGTAAAAATGTGGTCCAGCAATTGGATCTGATGACTGATTTGCTTGGCACCCCTTCTTATGAATCTATTGCGAGGgtatgttctcaattttcagttg---gttttccttctagggaaact---agtcatgattttaagcagtagcctctctgagttttaatgttacatttattctaaactag--gatgtgctcttgttttctaatgattttcatcttttacaatgcctgcag---------------------
|||    || |||||  | |||||||| ||||||||||| || ||||||||| | ||||| ||||| |||||||| ||  |   |||| | ||  | | |||  ||| |    || ||| ||   |||||  || |    ||  |   |    ||| ||  |||  |      |||| |    ||    | |   ||| |  |||||  ||    || |||  | | |   | ||| |  || ||   |   || |                      
GCTATTAGGGAAGCCGCTATTTCCTGGCAAAAATGTGGTTCACCAATTGGATATTATGACCGATTTTCTTGGCACTCCACCACCTGAAGCCATATCAAAGgtcagttatactattccagatgcttgttttagttttttcaaagtttagaactttgaattatagctctctttcttctgtggaagaagaaaaaaaagattattcactagttgaaaaactattggat-caagcaactttgag-ttgtattgtaaatgaatatgctatcttcaaattgtcag