Sequence
atgc intronic sequence ATGC exonic sequenceATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccgatgattatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os09g13870.3 (Oryza sativa), 5'ss of exon 6
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccgatgattatga-atggaatctttccttactctacttttttctgatttatacactcttctcagtataat--tctttgtccttcctctctggcag
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ATAGTATTTCTGCCTCTTCTTACTGCTGCACTTGTGGCTGTTTCTCGAGTGGATGACTACTGGCATCACTGGCAGGATGTATTTGCAGGCTCTCTGATAGgtttgcaatttcaataat-ataacaattatatgcaagaggtcctagcactatctaaaaggaaaaaaaaaatccacaaccatttcttgattctggcatttctcctgttgcag
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g49820.1 (Oryza sativa), 5'ss of exon 6
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccgatgattatgaatggaatctttccttactctacttttttctgatttatacac-tcttctcagtataattctttg-----tccttcctctctggcag----------
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ATTATTATTCTCCCTCTGCTCCTTGCAGCCTTGGTTGCTGTTTCTCGGGTAGATGACTATTGGCATCATTGGCAAGATGTGTTCACCGGTGGAATTTTGGgtaggttaattttatagtgttacctttgca---gattatacctcgcaacaagtaaaggaggtactgacaagtgtgctgcatgtaattcttggaaggttctaactttactgttaaaactttgcag
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g27040.1 (Oryza sativa), 5'ss of exon 7
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccgatgattatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcag
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ATAGTATTTCTGCCTCTACTTGTTGCGTCCCTTGTGGCAGTCTCTCGAGTTGATGATTACTGGCATCACTGGCAAGACGTATTTGCAGGTGGCATTATAGgtttgttattttgaagccttt--ctctcaacca---tttagaacactct-cgttgtcagaaagtaggcatggatctc-gtctcattcttctttcccctttttcag---
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g27030.2 (Oryza sativa), 5'ss of exon 6
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccgatgattatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcag
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CTAGTCTTTCTGCCTCTACTTGTTGCATCACTTGTGGCAGTCTCTCGGGTTGACGATTACTGGCATCACTGGCAAGATGTATTTGCAGGCGGCATTATAGgtctgtagtttcaacgcttctg--taccactttaaacattc-ttgctct-------caagataagtacatgtaattca-tctcattctcta-ccttattcag------
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G077187_T01 (Zea mays), 5'ss of exon 6
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttat------cagtaccgatgattatgaatggaatctttcctt----------actctacttttttctgatttatacactcttctcagtata-attctttgtccttcc--tctctggcag-----------------------------
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ATTGTCCTTTCCCCTCTGCTTCTTGCAGCCTTAGTGGCAGTTTCTCGAGTTGATGACTATTGGCATCATTGGCAAGACGTATGTACTGGCGGATTACTTGgtaggtcttgaataacacaccccctctcgttccctccacagacactacaaagaaatggaaacgttatgttcatatggttcttctattctatgaaatgtatgtacatagtacatacgattctcaaaagttgaaggtatttttttttacaacgtgcag
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G024615_T05 (Zea mays), 5'ss of exon 7
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccgatgattatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcag
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ATTGTGTTTCTGCCTCTTCTTACTGCTGCGCTTGTGGCTGTTTCTCGAGTGGATGACTACTGGCATCATTGGCAAGATGTATTTGCAGGGGGTCTTATAGgtttgtaaaatttg-ataaatattttctaaagaggacgcagatttttctagatgttctgaatacacataattgatcatatttcttgccatggccacttgcttttgcag
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G447433_T08 (Zea mays), 5'ss of exon 8
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccgatgattatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcag
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TTAGTTTTTCTGCCTCTACTTGTCGCGTCACTTGTGGCTGTTTCTCGAGTTGATGATTACTGGCATCACTGGCAAGATGTCTTTGCCGGCGGCATCATAGgtttgct-----agtatt--tgatgctcttttgtatttagcatttcga-acacccttcacaatcaaaagtcaatcatggagtgtcattctcttatttcttttcag---
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G050658_T03 (Zea mays), 5'ss of exon 6
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccgatgattatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcag
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ATTGTGTTCCTGCCTCTCCTTACTGCCGCACTTGTGGCTGTTTCTCGAGTGGACGACTACTGGCATCATTGGCAAGATGTATTTGCAGGGGGTCTTATAGgtccgtaaaattttgatagatcttttcaaaagagaatgcagatttttctagatgttctgaacatacataattgatcatatttctcgtcatggccacttggttttgcag
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G41580.1 (Glycine max), 5'ss of exon 6
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccga--tgattatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcag
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CTTGTTTTCTTACCATTCCTCGTGGCAGCTATGATTGCTGTCTCTCGTGTTGATGATTATTGGCATCATTGGCAAGATGTGTTTGCTGGAGCTCTAATAGgttagttt-actgatgccagattgattaaatatttcaataaacccttttcaaagttt--ctgatacgaatattttttttaccag--------------------------
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G18450.2 (Glycine max), 5'ss of exon 6
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccgatgattatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcag
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ATTGTTTTCTTTCCGCTTCTTGTGGCAGCTATGATTGCTGTCTCTCGTGTTGATGATTATTGGCATCATTGGCAAGATGTTTTTACTGGAGGGCTTATAGgtctgtt-----------gaagactggattt----tctttgtttgatttattaatatgtaa---atatacttttctcca---gactttttatacgagcttttatgcag
upper sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G15080.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttt-tatcagtaccgatga--ttatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcag
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ATTGTGATTTTACCTCTACTGGTTGCAGCATTGGTTGGTGTATCCAGAGTTGATGACTATTGGCATCACTGGCAAGATGTTTTTGGAGGAGCTATCATAGgtttgtttgtttttgtcttttttaactcatgaattcaaaattacgtgagaaacaaagctgatgacagacacacatctttct-tgcaatgtccag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110427784|gb|EC994235.1|EC994235EST: AGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAG GAGCAACAGTTGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATG
genomic: AGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgtttta ... tctctggcagGAGCAACAGTTGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTTTTCCTGCCCATACTTCTTGCAGCTCTAGTGGGAGTTTCTCGAGTAGATGACTATTGGCATCACTGGCAAGATGTATTTGCCGGAGGTGTAATAGgtctgttttatcagtaccgatgattatgaatggaatctttccttactctacttttttctgatttatacactcttctcagtataattctttgtccttcctctctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG