Sequence
atgc intronic sequence ATGC exonic sequenceTATATTGGGGCAATCAATGGGAGGAGCTGTTACTCTCAAAGCTCATCTAAAGGAACCAAGTGGATGGGATGGAGTGATTCTTGTAGCCCCAATGTGTAAAgtaattccatccttgcacctactttatttgtggtcatatggaaagcccataattttaactgttgagccatcaatgcatttctttttccttattttgttcc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03620.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G19820.1 (Glycine max), 5'ss of exon 5
TATATTGGGGCAATCAATGGGAGGAGCTGTTACTCTCAAAGCTCATCTAAAGGAACCAAGTGGATGGGATGGAGTGATTCTTGTAGCCCCAATGTGTAAAgtaattccatccttgcacctactttatttgtggtcatatggaaagcccataattttaactgttgagccatcaatgcatttctttttccttattttgttcc--
|||||| ||||| |||||||| ||||| ||| |||| |||| |||| | | ||| |||| | ||||||||| |||| |||||||| |||||||||||||||| ||| | | || |||| ||| | | | ||||| | | || | || ||| | ||| ||
TATATTAGGGCAGTCAATGGGTGGAGCAGTTTCTCTTAAAGTTCATTTGAGGGAGCCAAATAATTGGGATGGAATGATACTTGTAGCACCAATGTGTAAAgtaagctcattcctctg--tattttaattgatgctcaacaacttcatttttatttttattttttattttcgaagtcatgattcagcttgaattcctttatca
upper sequence: Vv01s0011g03620.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G25020.2 (Glycine max), 5'ss of exon 4
TATATTGGGGCAATCAATGGGAGGAGCTGTTACTCTCAAAGCTCATCTAAAGGAACCAAGTGGATGGGATGGAGTGATTCTTGTAGCCCCAATGTGTAAAgtaattccatccttgcacctactttatt--tgtggtcatatggaaagcc--cataatttt-aactgttgagccatcaatgcatttctttttccttattttgttcc
||||||||||| |||||||| ||||| || |||| || | |||| | ||||||| || ||||||||||| || ||||| || |||||||||||||||| |||| | || | | ||| || | | | |||||||| || | ||| ||| | | || | || |
CATATTGGGGCAGTCAATGGGTGGAGCAATTGCTCTTAAGGTTCATTTGAAGGAACAAAACACTTGGGATGGAGTAATCCTTGTTGCACCAATGTGTAAAgtaagtccacttcctctgttatgcaactgatgtcaccagcttcattatcggtataattttcaagttctgaatcattc-tatagtttgagagcattgaagta----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110689348|gb|EE065495.1|EE065495EST: AGGAACCAAGTGGATGGGATGGAGTGATTCTTGTAGCCCCAATGTGTAAA ATTGCAGAAGATGTGACACCCCCACCAGCAGTGCTGAAGGTATTGACTCTG
genomic: AGGAACCAAGTGGATGGGATGGAGTGATTCTTGTAGCCCCAATGTGTAAAgtaattccat ... ttgtgccaagATTGCAGAAGATGTGACACCCCCACCAGCAGTGCTGAAGGTATTGACTCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATATTGGGGCAATCAATGGGAGGAGCTGTTACTCTCAAAGCTCATCTAAAGGAACCAAGTGGATGGGATGGAGTGATTCTTGTAGCCCCAATGTGTAAAgtaattccatccttgcacctactttatttgtggtcatatggaaagcccataattttaactgttgagccatcaatgcatttctttttccttattttgttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa