Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttactattgagctaatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag

Basic information

species Vitis vinifera
transcript Vv01s0011g03280.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 6
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgt--gctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttactattgagctaatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag
|||||| ||||| || ||||| ||||| || ||||| ||||| ||||||  ||| |||| |||  | ||||||||||| ||||||||||| ||||| |||||  ||  ||| |||   ||| | | ||     || || |    ||     | ||     | |||| |||     || ||  |||| |||  |                                  
TGAGGCGGAAGTGCGGATAGCGGCTGCAGGGAAAGTTACTAAGTTCTGTAGGATTTTAAGTCCTCAGCTTGCAATTCAGCATATTCTTCCTTGTGTCAAGgtgggccaacgcttaaccaaatattattaactggttttctgc--tgctgtttattcccagcaaactaactt----gccaac-tgcatctgcag----------------------------------

upper sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttacta--ttgagctaatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag
|||||||||||| |||||||| |||||||| ||||||||||| ||||| |  || ||||||||| | ||| |||| || ||||||||||| || || ||||||    |          | ||   || |  || || | |  | | |  |||  |    ||| | ||||  |   |||||| ||||  | | |                                  
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgc----------aaagcaattattcgttttgt-tgctattttttttc-tgagtgaattaactagttcatgctaat-tgcatttatag----------------------------------

upper sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G102858_T01 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttactattgagctaatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag
|||||||||||| || || ||||||||||| ||||| || ||||||||  | || ||||| ||| || |||||||| | ||||||||||| ||| | ||||||         |||  |  |    |  |  |   |  |  |  | | |  | ||| ||       || |||  || ||                                              
TGAGGCTGAAGTGCGGATTGCAGCTGCTGGAAAAGTTACAAAATTCTGCAAAATATTAAACCCACAAATTGCAATTGAACATATTCTTCCGTGTATCAAGgtgtgtttaagcattgcacaaacactattgagctctgcacca-atattcagtggttaacttgtgc-cttttgtactcatag--------------------------------------------

upper sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttactattgagctaatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag
|||||||||||| || |||||||||||||| ||||||||||| || || |  || ||||||||  | ||  || | || ||||||||||| || || ||||||    |       ||   | | ||   |   |||   |      |  | || |    ||| | |||  ||  | || ||||| ||   |                                  
TGAGGCTGAAGTGCGGATAGCAGCTGCTGGAAAAGTAACTAAGTTTTGCCGCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggca------aagcaattattgaacaccatttcgttgctatttttcttctgagtgaattaactcatg--ccaa-gtgcatctacag----------------------------------

upper sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 6
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttactattgagctaatgtgc--acctgttgagctttctcaatatttggtgatgtcattttgtag---------------
||||||||||||||| |||||||||||||| ||||| || || || || | ||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||   ||  |||   |||  | |  |       |||| ||| |  ||  || | | ||    ||| |  | |   |  | ||   |     |  | |   |  ||||||   | | | | ||  | |               
TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatctttggaaaagaaat--tataacacatta-atatta-ctgattatatacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag

upper sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagt------------gtttctctg-tattatataatgtctccttttgttcacgaacttactattgagc-taatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag
|||||||||||| || |||||||||||||| ||||| || || || || | ||| ||||||||||| ||| ||||||| ||||||||| | ||||| |||||   ||  |||   |||  | |            || |  ||| |  |||| |  | ||  | ||| |   |      | ||| ||  |  |       | || |    | | | |  || |  |   | ||||| ||
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattatatacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaac-ttttgcag

upper sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 6
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttactattgagctaatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag
||| ||||||||||| || ||||||||||| ||||| || || || || | ||| ||||||||||| ||| ||||||| ||||||||||| || || |||||| || | ||  ||       ||    || ||||| |  | | | |    ||     | ||  |||| |  |     | ||||                                         
TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtg-tctctttggttttggtcttgaaattcagtattctgaattatat----ttacaggctaaaatactttgcaagatctttgcag----------------------------------------

upper sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 6
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgttt-ctctgtattatataatgtctccttttgttcacgaacttactattgagctaatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag
|||||| ||||| || |||||||||||||| ||||| || || || ||||  || ||||| || ||||| || || || || |||||||||||||||||||| | |||  |||  || || |||||   |   ||||||  || |   |    |  |  ||   ||  |  | |||| |  |  |  | |  |  |                              
TGAGGCAGAAGTTCGGATAGCAGCTGCTGGAAAAGTTACCAAGTTTTGTCGCATTTTAAACCCTGAACTCGCTATCCAGCACATTCTTCCCTGTGTAAAGgtacacac--ttaagaagagtgtgttgatttcatattatgcaaaggaccaaaatactgtcggtgtt--tgctaagcttacctataaatctacacgtag----------------------------

upper sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttactattgagctaatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag
|||||||||||| ||||||||||| || || ||||| || || ||||||| | | || |||||||| ||||| ||||| || || ||||| ||||| |||||    | |  |  | |||   | | |    |  || | | ||||| ||| |     |  |   |  ||   | || ||||    | |                                     
TGAGGCTGAAGTGCGAATAGCAGCAGCGGGAAAAGTGACCAAGTTCTGTCGGCTTTTGAATCCAGAGCTTGCGATTCAGCACATCCTTCCTTGTGTGAAGgt----aagactccttaaattctatataaacgagttgtttgatgtcccctgtctcgtaatattctgatacata-ctgatgtctggcag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71884601|gb|DT033656.1|DT033656
EST:     AGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAG                         GAATTGTCATTAGATTCGTCCCAGCATGTCCGCTCTGCCTTGGCTTCAGTT
genomic: AGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgt ... cattttgtagGAATTGTCATTAGATTCGTCCCAGCATGTCCGCTCTGCCTTGGCTTCAGTT
EST: gi|351038699|gb|FQ464565.1|FQ464565
EST:     AGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAG                         GAATTGTCATTAGATTCGTCCCAGCATGTCCGCTCTGCCTTGGCTTCAGTT
genomic: AGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgt ... cattttgtagGAATTGTCATTAGATTCGTCCCAGCATGTCCGCTCTGCCTTGGCTTCAGTT
EST: gi|71884162|gb|DT033217.1|DT033217
EST:     AGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAG                         GAATTGTCATTAGATTCGTCCCAGCATGTCCGCTCTGCCTTGGCTTCAGTT
genomic: AGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgt ... cattttgtagGAATTGTCATTAGATTCGTCCCAGCATGTCCGCTCTGCCTTGGCTTCAGTT