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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGACTTAAAGAAGGATCTGGAGGATTGCCAAGATCTGGTCCTTGATCCGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcacttattctttacgctattttgtttccttgaatttattgggttccattgttgcttgtagaagttccttttggttgaaatgagtttaccaaatgttatgcag

Basic information

species Vitis vinifera
transcript Vv01s0011g02990.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110386678|gb|EC951294.1|EC951294
EST:     CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTT                         GAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
genomic: CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcac ... tgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
EST: gi|110389966|gb|EC954845.1|EC954845
EST:     CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTT                         GAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
genomic: CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcac ... tgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
EST: gi|34545444|gb|CF513676.1|CF513676
EST:     CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTT                         GAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
genomic: CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcac ... tgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
EST: gi|110694266|gb|EE071224.1|EE071224
EST:     CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTT                         GAATTTGGATCTCANGACAGCTTTATTGCCTGGGGTGGTGAGCAA
genomic: CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcac ... tgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAA
EST: gi|34543200|gb|CF511432.1|CF511432
EST:     CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTT                         GAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT
genomic: CGGCAAACATAGAACTCGATACACCTCCTGATTTCCGGTTGAGCCAGCTTgtatgatcac ... tgttatgcagGAATTTGGATCTCAGGACAGCTTTATTGCCTGGGGTGGTGAGCAAGGTGGT